View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_37 (Length: 356)
Name: NF11655_low_37
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 49017507 - 49017187
Alignment:
| Q |
17 |
cagagatacatacacctgagtctaatggtactcaatttttcacttgttactaaaagtataacaaagctcatagatgttgttcaatttgcaaatttatttc |
116 |
Q |
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| T |
49017507 |
cagagatacatacacctgagtctaatggtactcaatttttcacttgttactaaaagtataacaaagctcatagatgttgttcaatttgcaaatttatttc |
49017408 |
T |
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| Q |
117 |
taactaaaccctgattcaattataataaaataacatctatactctcctccaatttcatttagcattaagttgatttggataattatgtttaactagttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49017407 |
taactaaaccctgattcaattataataaaataacatctatactctcctccaatttcatttagcattaagttgatttggataattatgtttaactagttta |
49017308 |
T |
|
| Q |
217 |
atgtgactagtaattaattgcaaagtagtaaaaggaagtaattagtagcttatggtcttttatagcaagttttggtagacgttacatgtaaaactacctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
49017307 |
atgtgactagtaattaattgcaaagtagtaaaaggaagtaattagtagcttatggtcttttatagcaagtttttgtagacgttacatgtaaaactatctt |
49017208 |
T |
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| Q |
317 |
cttcatcatacaattagtggt |
337 |
Q |
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||||||||||||||||||||| |
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| T |
49017207 |
cttcatcatacaattagtggt |
49017187 |
T |
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