View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_42 (Length: 338)
Name: NF11655_low_42
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 44737533 - 44737861
Alignment:
| Q |
18 |
gttgcaacgttagatttttgaagttttaacaaaaataacaatcaaagtaacattgtcattgtgatatcgtcaattatacactaatttgatatttgatcca |
117 |
Q |
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| T |
44737533 |
gttgcaacgttagatttttgaagttttaacaaaaataacaatcaaagtaacattgtcattgtgatatcgtcaattatacactaatttgata-ttgatcca |
44737631 |
T |
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| Q |
118 |
tcatctggtatgaagacgtacatgcatgatg-----------------tgtcaaaatagc-ttggtagtttcaaaatcaagatcattagttaaacatgaa |
199 |
Q |
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| T |
44737632 |
tcatctgatatgaagacgtacatgcatgatgtgtcaaaataatttttatgtcaaaatagctttggtagtttcaaaatcaagatcattagttaaacttgaa |
44737731 |
T |
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| Q |
200 |
taatctctcccatccaaatgtttttggatctgatt------------tcaacctcaaagatcatttaattttcgaggtatttgtttgcatgctaattttt |
287 |
Q |
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| T |
44737732 |
taatctctcccatccaaatgtttttggatctgattttgttggaacactcaacctcaaagatcatttaattttcgaggtatttgtttgcatgctaattttt |
44737831 |
T |
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| Q |
288 |
agtgaaaaagattgatggacacccaatgca |
317 |
Q |
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| T |
44737832 |
agtgaaaaagattgatggacacccaatgca |
44737861 |
T |
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