View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_43 (Length: 337)
Name: NF11655_low_43
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 27916864 - 27917066
Alignment:
| Q |
17 |
aagtggaatttggtt--gtttttccaaaatcacaagtatcttattttgtaatggtaattgaccaagttgaaattgtctttttgcattaggtagaagcaat |
114 |
Q |
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| T |
27916864 |
aagtggaatttggttttgtttttccaaaatcacaactatcttattttgtaatggtaattgaccaagttgaaattgtctttttgcattaggtagaagcaat |
27916963 |
T |
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| Q |
115 |
cacttcttatacgtgaagctgaaataactt--tctatataagtcgaatcaaatataacttgttgtacccaaaaaagttatataacttgatgtcgtatgtg |
212 |
Q |
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| T |
27916964 |
aacttcttatacgtgaagctgaaataactttatatatataagtcgaatcaaatataacttgttgtacccaaaaaagttatataacttgatgtcgtatgtg |
27917063 |
T |
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| Q |
213 |
taa |
215 |
Q |
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||| |
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| T |
27917064 |
taa |
27917066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 27917128 - 27917202
Alignment:
| Q |
213 |
taaacatctataatttaaagaacattccataacttgtgtaatattgatgtctttggcatggggtttagcaattgtg |
288 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27917128 |
taaatatctataatttaaagaacattccataacttgtgtaatattgatgtc-ttggcatggggtttagcaattgtg |
27917202 |
T |
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