View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_44 (Length: 329)
Name: NF11655_low_44
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 7256633 - 7256311
Alignment:
| Q |
1 |
tatcctaacctgtatcagcgagtatttaagtaagatcttgttaacaaatgccctaaatcactctttaaggattctaaatgaaaaaaccactcattaacga |
100 |
Q |
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| T |
7256633 |
tatcctaaccggtatcagcgagtatttaagtaaggtcttgttaataaatgccctaaatcactctttaaggattctaaatgaaaaaaccactcattaacga |
7256534 |
T |
|
| Q |
101 |
aatcacagtgaaccaccacattttgacaaaaaccatacttaatttaaaatttcaacacaatgattttatcagcgtcaccaccgatctaaccatacaccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7256533 |
aatcacagtgaaccaccacattttgacaaaaaccatacttaatttaaaatttcaacacaatgattttatcagcgtcaccaccgatctaaccatacaccca |
7256434 |
T |
|
| Q |
201 |
ctccctgctctttctgttttcccttcttacttattcttcattttccaccaaattcaactctaaatatgcctcattttgtgataatacagtcaagggatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7256433 |
ctccctgctctttctgttttcccttcttacttattcttcattttccaccaaattcaactctaaatatgcctcattttgtgataatacagtcaagggatta |
7256334 |
T |
|
| Q |
301 |
aaaccaaatcattttcttctcac |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7256333 |
aaaccaaatcattttcttctcac |
7256311 |
T |
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