View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_46 (Length: 323)
Name: NF11655_low_46
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 5575052 - 5574930
Alignment:
| Q |
19 |
tgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaaaagaggtgggtcaaatttaagtggatgataatgatgatagttg |
118 |
Q |
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| T |
5575052 |
tgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaaaggaggtggatcaaatttaagtggatgataatgatgatagttg |
5574953 |
T |
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| Q |
119 |
agttggtttttacaattgttaat |
141 |
Q |
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| T |
5574952 |
agttggtttttacaattgttaat |
5574930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 5572143 - 5572015
Alignment:
| Q |
30 |
gtttgatccgatttgtgtttgataagctagttgataactttagcaaaagaggtgggtcaaatttaagtggatgataatgatgatagttgagttggttttt |
129 |
Q |
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| T |
5572143 |
gtttgattctatttgtgtttgatagtttatttgataactttagcaaaagaggtgactcacagttaggtggatgataatgatgataattaagttggttttt |
5572044 |
T |
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| Q |
130 |
acaattgttaatggctaagtagaataaac |
158 |
Q |
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| T |
5572043 |
acaattgttaatggatatgtggaataaac |
5572015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 5579771 - 5579653
Alignment:
| Q |
40 |
atttgtgtttgataagctagttgataactttagcaaaagaggtgggtcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgtta |
139 |
Q |
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| T |
5579771 |
atttgtgtttgatagcttagttgataaatttagcaaaagaggtgattcacagttaagcggatgataatgatgataattaagttggtttttacaattgtta |
5579672 |
T |
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| Q |
140 |
atggctaagtagaataaac |
158 |
Q |
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| T |
5579671 |
atgggtaggttgaataaac |
5579653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 5570285 - 5570227
Alignment:
| Q |
202 |
ccttctcttattcagccaaagagatgaatgagctgaaaaatagtgatgagaatttgttg |
260 |
Q |
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| T |
5570285 |
ccttctcttattcagtcaaagagatgaatgagctgaaaaatagtgatgagaatttgttg |
5570227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 5579598 - 5579521
Alignment:
| Q |
200 |
tgccttctcttattcagccaaagagatgaatgagctgaaaaatagtgatgagaatttgttgagcaagttttatggcata |
278 |
Q |
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| T |
5579598 |
tgccttctcttagtcagccaaagagatgaatgagctgaaaaa-agtgatgagaaattgttgcacatgttttctggcata |
5579521 |
T |
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