View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11655_low_48 (Length: 319)
Name: NF11655_low_48
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 39691213 - 39691017
Alignment:
| Q |
1 |
gaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691213 |
gaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgctc |
39691114 |
T |
|
| Q |
101 |
ttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataattaatcaac |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691113 |
ttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataattaatcaac |
39691017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 39700398 - 39700213
Alignment:
| Q |
5 |
gagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgctcttga |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| | ||| |||||| | | |||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
39700398 |
gagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgctcttta |
39700299 |
T |
|
| Q |
105 |
tattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataatt |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || || ||||||| | ||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
39700298 |
tattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatt |
39700213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 39931011 - 39931190
Alignment:
| Q |
8 |
ccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatat |
107 |
Q |
| |
|
||||||||||| ||||||| |||||| || || | |||||||| ||| ||||||||||| ||||| ||| ||| |||| |||| |||||||||| |||| |
|
|
| T |
39931011 |
ccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatttgagttgcagtgatgctctttatat |
39931110 |
T |
|
| Q |
108 |
tgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctata |
187 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
39931111 |
tgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatacctata |
39931190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 39690981 - 39690913
Alignment:
| Q |
233 |
ttgacatgcttttgatatcaagtgattgagctcaagaatgagctcattgagcaacaaatagttcaggag |
301 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39690981 |
ttgacatgctttttatatcaagtgattcagctcaagaatgagctcattgagcgacaaatagttcaggag |
39690913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 39935317 - 39935391
Alignment:
| Q |
57 |
tgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatattgaattcacttataagatatacaa |
131 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
39935317 |
tgcttccgataacaatgtttacaatctgagcagcaatgatgctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University