View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_5 (Length: 664)
Name: NF11655_low_5
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 7741921 - 7742234
Alignment:
| Q |
13 |
tggacatcaatgattagttacgtggttgattgtttctaaactgaatgtgtaaagaaatttagacgaggaaatattccccgttttttaaattttcactgat |
112 |
Q |
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| T |
7741921 |
tggacatcaatgattagttacgtggttgattgtttctaaactgaatgtgtaaagaaatttagacgaggaaatattccccgttttttaaattttcactgat |
7742020 |
T |
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| Q |
113 |
ttgttatgtgcaatattgtcttatctacaggtttctgtttctctcatgggatcaggagaccagcctgattcccacgataacttgattgaactggttggca |
212 |
Q |
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| T |
7742021 |
ttgttatgtgcaatattgtcttatctacaggtttctgtttctctcatgggatcaggagaccagcctgattcccacgataacttgattgaactggttggca |
7742120 |
T |
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| Q |
213 |
gtcctgaaactcgctttcttgacttgttcagtcaacagcaattacaggtaagatactatttcttcttctcaaagaaatatcaacttcacactgtttatcc |
312 |
Q |
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| T |
7742121 |
gtcctgaaactcgctttcttgacttgttcagtcaacagcaattacaggtaagatactatttcttcttctcaaagaaatatcaacttcacactgtttatcc |
7742220 |
T |
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| Q |
313 |
tgttttataccgtt |
326 |
Q |
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| T |
7742221 |
tgttttataccgtt |
7742234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 363 - 648
Target Start/End: Original strand, 7742233 - 7742518
Alignment:
| Q |
363 |
ttattggcttcttatttctctgcaacaccgattatatcacacaagtaacaagttagatacctttgatactttttcaaatgttaccgagacacctattata |
462 |
Q |
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| T |
7742233 |
ttattggcttcttatttctctgcaacaccgattatatcacacaagtaacaagttagatacctttgatactttttcaaatgttaccgagacacctattata |
7742332 |
T |
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| Q |
463 |
ctgactagatgtttaccgtttaatttgtaggagtttttattgatggagagggaatactcaatctgcaaactggagcatacacaggaatgattgattataa |
562 |
Q |
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| T |
7742333 |
ctgactagatgtttaccatttaatttgtaggagtttttattgatggagagggaatactcaatctgcaaactggagcatacacaggaatgattgattataa |
7742432 |
T |
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| Q |
563 |
cccactgggcaaacttaatccagtgcattatctagagctacacttttgaaagaatctaatgcttttataaaacgcttgcattttgt |
648 |
Q |
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| T |
7742433 |
cccactgggcaaacttaatccagtgcattatctagagctacacttttgaaagaatctaatgcttttataaaacgcttgcattttgt |
7742518 |
T |
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