View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_low_51 (Length: 301)

Name: NF11655_low_51
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_low_51
NF11655_low_51
[»] chr5 (1 HSPs)
chr5 (22-301)||(43408649-43408934)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 43408649 - 43408934
Alignment:
Q  22 gatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaa---gcaaacaatca---tcagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||   ||||||    
T  43408649 gatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaattagcaaacaatcatcatcagat 43408748  T
Q  116 catagtactggatttgattaaatcaacaaaaactaaataaaattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagc 215  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408749 catagtactggatttgattagatcaacaaaaactatataaaattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagc 43408848  T
Q  216 agccgtgaacgagataatggaagtgttggcttcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctac 301  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408849 agcggtgaacgagataatggaagtgttggcgtcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctac 43408934  T

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