View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_53 (Length: 290)
Name: NF11655_low_53
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 12452243 - 12452507
Alignment:
| Q |
18 |
aaacctatcgttcattcacatccaatttgcnnnnnnncaaatatacgatggtctggaaacggtctgcaggagtttcaa-caagataaatatatacggaat |
116 |
Q |
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| T |
12452243 |
aaacctatcgttcattcacatccaatttgcaaaaaaacaaatacaagatagtctggaaacagtctgcaggagtttcaaacaagataaatatatacggaag |
12452342 |
T |
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| Q |
117 |
aagcaaatcaaaggatcaa-ccctgagcaggagcaggaccaggcttggaagactgctgctcacttgctgctgcagctgcttttgatggctcggaaaggac |
215 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
12452343 |
aagcagatcaaaggatcaaaccctgagcaggagcaggaccaggcttggaagactgctgctcacttgctgctgctgctgcttttgagggttcggaaaggac |
12452442 |
T |
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| Q |
216 |
ctgtgcatactgatcttcaacctgtcgcttctcttgctgttctgcattctccactttctcctttg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12452443 |
ctgtgcatactgatcttcaacctgtcgcttctcttgctgttctgcattctccactttctcttttg |
12452507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 12449980 - 12450233
Alignment:
| Q |
18 |
aaacctatcgttcattcacatccaatttgcnnnnnnncaaatatacgatggtctggaaacggtctgcaggagtttcaa-caagataaatatatacggaat |
116 |
Q |
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| T |
12449980 |
aaacctatcgttcattcacatccaatttgcaaaaaa-caaatacaagatagtctggaaac-------aggagtttcaaacaatataaatatatacggaag |
12450071 |
T |
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| Q |
117 |
aagcaaatcaaaggatcaa-ccctgagcaggagcaggaccaggcttggaagactgctgctcacttgctgctgcagctgcttttgatggctcggaaaggac |
215 |
Q |
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| T |
12450072 |
aagcaaatcagaggatcaaaccctgagcaggagcaggaccaagcttggaagactactgctcacttgctgctgc---tgcttttgagggctcggaaaggac |
12450168 |
T |
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| Q |
216 |
ctgtgcatactgatcttcaacctgtcgcttctcttgctgttctgcattctccactttctcctttg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12450169 |
ctgtgcatactgatcttcaacctgtcgcttctcttgctgttctgcattctccactttctcttttg |
12450233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 27639003 - 27638872
Alignment:
| Q |
146 |
gagcaggaccaggcttggaagactgctgctcacttgctgctgcagctgcttttgatggctcggaaaggacctgtgcatactgatcttcaacctgtcgctt |
245 |
Q |
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||||||| ||||||||||||| ||| | ||||||| |||||| |||||||| | ||| ||||||||||| |||||||| |||||||| | || || |
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| T |
27639003 |
gagcaggtgcaggcttggaagagtgcagttcacttgttgctgc---tgcttttggggactccgaaaggacctgcgcatactggtcttcaactttacgatt |
27638907 |
T |
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| Q |
246 |
ctcttgctgttctgcattctccactttctcctttg |
280 |
Q |
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|| || | ||||||||| ||||||||||| |||| |
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| T |
27638906 |
ctgttccacttctgcattttccactttctcttttg |
27638872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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