View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_54 (Length: 284)
Name: NF11655_low_54
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 38485419 - 38485202
Alignment:
| Q |
16 |
agaacgattttgacatttgaaatgcgcgctaccgaagttttcacattacaaaccaatcctcacaag-------gaggtatattaaaaattgtaaattatt |
108 |
Q |
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| T |
38485419 |
agaacgattttgacatttgaaatgcgc--tatcgaagttttcacgttacaaaccaatcctcacaagtcacaaggaggtatattaaaaattgtaaattatt |
38485322 |
T |
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| Q |
109 |
acatcaatcctcaactttaattatacactctctacgacttagtaacttgtctattttgcaatctatgtttaaacatgatccggtcatttggtgtggatca |
208 |
Q |
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| T |
38485321 |
acatcaatcctcaaccttaattatacactctctacgacttaacaacttgtctattttgcaatctatgtttaaacatgatccggtcatttgatgtggatca |
38485222 |
T |
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| Q |
209 |
caagtttgacgatgacatat |
228 |
Q |
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||| |||||||||||||||| |
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| T |
38485221 |
caaatttgacgatgacatat |
38485202 |
T |
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