View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11655_low_60 (Length: 258)

Name: NF11655_low_60
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11655_low_60
NF11655_low_60
[»] chr2 (3 HSPs)
chr2 (34-85)||(17830057-17830108)
chr2 (95-171)||(11911259-11911335)
chr2 (95-174)||(17785721-17785800)
[»] chr5 (2 HSPs)
chr5 (35-85)||(7822335-7822385)
chr5 (34-86)||(28662926-28662979)
[»] chr6 (1 HSPs)
chr6 (34-86)||(11303171-11303223)
[»] chr1 (2 HSPs)
chr1 (34-86)||(36687957-36688009)
chr1 (40-74)||(26024269-26024303)
[»] scaffold0002 (1 HSPs)
scaffold0002 (34-86)||(114932-114984)
[»] scaffold0248 (1 HSPs)
scaffold0248 (34-85)||(16909-16959)
[»] chr3 (1 HSPs)
chr3 (34-85)||(27545768-27545819)
[»] scaffold0351 (2 HSPs)
scaffold0351 (34-79)||(5374-5419)
scaffold0351 (43-80)||(13716-13753)


Alignment Details
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 17830108 - 17830057
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17830108 atggttaacttgattgatctatatttatatttttgcatataatttttgttga 17830057  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 11911335 - 11911259
Alignment:
Q  95 ttcatttcttcgagtttttgagtcaagatcttgttttgtgcaaggatggcatcatttgatcccaattcaaggattcc 171  Q
    ||||| ||||| |||| |||||||||||| ||||||||||||||  | ||||||  |||||| || |||||||||||    
T  11911335 ttcatctcttcaagttgttgagtcaagattttgttttgtgcaagatttgcatcagctgatcctaactcaaggattcc 11911259  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 17785800 - 17785721
Alignment:
Q  95 ttcatttcttcgagtttttgagtcaagatcttgttttgtgcaaggatggcatcatttgatcccaattcaaggattccaga 174  Q
    ||||| ||||| |||| |||||||||||  ||||||||||||||  | ||||||  |||||| || ||||||||||||||    
T  17785800 ttcatctcttcaagttgttgagtcaagaatttgttttgtgcaagatttgcatcagctgatcctaactcaaggattccaga 17785721  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 7822385 - 7822335
Alignment:
Q  35 tggtaaacttgattgatctatatttatatttttgcatataatttttgttga 85  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7822385 tggttaacttgattgatctatatttatatttttgcatataatttttgttga 7822335  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 28662979 - 28662926
Alignment:
Q  34 atggtaaacttgattgatctatatttatattttt-gcatataatttttgttgag 86  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  28662979 atggttaacttgattgatctatatttatatttttggcatgtaatttttgttgag 28662926  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 11303171 - 11303223
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttgag 86  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  11303171 atggttaacttgattgatctacatttgtatttttgcatataatttttgttgag 11303223  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 36687957 - 36688009
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttgag 86  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||||    
T  36687957 atggttaacttgattgatctgtatttatattcttgcatataatttttgttgag 36688009  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 26024269 - 26024303
Alignment:
Q  40 aacttgattgatctatatttatatttttgcatata 74  Q
    |||||||||||||||||||||||||||||||||||    
T  26024269 aacttgattgatctatatttatatttttgcatata 26024303  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 114932 - 114984
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttgag 86  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| |||||    
T  114932 atggttaatttgattgatctatacttatatttttgcatataattttttttgag 114984  T

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Target: scaffold0248 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 16909 - 16959
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttga 85  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  16909 atggttaacttgattgatctatatttata-ttttgtatataatttttgttga 16959  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 27545768 - 27545819
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttttgttga 85  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  27545768 atggttaacttgattgatctatatttatatttttatttataatttttgttga 27545819  T

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Target: scaffold0351 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 5419 - 5374
Alignment:
Q  34 atggtaaacttgattgatctatatttatatttttgcatataatttt 79  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||    
T  5419 atggttaatttgattgatctatacttatatttttgcatataatttt 5374  T

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Target: scaffold0351; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 13753 - 13716
Alignment:
Q  43 ttgattgatctatatttatatttttgcatataattttt 80  Q
    |||||||||||||| |||||||||||||||||||||||    
T  13753 ttgattgatctatacttatatttttgcatataattttt 13716  T

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