View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_62 (Length: 250)
Name: NF11655_low_62
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36323241 - 36323474
Alignment:
| Q |
1 |
caacactgcttaagacatcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaatcatacaatgg |
100 |
Q |
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| T |
36323241 |
caacactgcttaagacctcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaataatacaatgg |
36323340 |
T |
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| Q |
101 |
tccttagcttgaatgctgaattaggggaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatctatcactattcaaatcttgcttca |
200 |
Q |
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| T |
36323341 |
tcctt-----gaatgctgaattagaggaatggattctctgaagtgtaatttacacttgagagagtaaagtgtgatctatcactattcaaatcttacttca |
36323435 |
T |
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| Q |
201 |
tctaatgttattcccctgaattagctacttcggattcat |
239 |
Q |
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| T |
36323436 |
tctaatgttattcctctgaattagctacttcggattcat |
36323474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 36303259 - 36303344
Alignment:
| Q |
18 |
tcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaatcatacaatggtcctt |
105 |
Q |
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| T |
36303259 |
tcaatctaatggtttaatttgccaaatatgtgatttaagccatctaattttg--ttgagctaaattttaccatcatacaatggtcctt |
36303344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 3229156 - 3229104
Alignment:
| Q |
125 |
gggaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatct |
177 |
Q |
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| T |
3229156 |
gggaatggatcctctcatgtgtaatttacacatgagagaataaagtgtgatct |
3229104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 49655309 - 49655373
Alignment:
| Q |
127 |
gaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatctatcactattcaaat |
191 |
Q |
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| T |
49655309 |
gaatggattctcacagatgtaatttacacataagagagtaaagtgtcatctctcaccattcaaat |
49655373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 38656220 - 38656264
Alignment:
| Q |
144 |
tgtaatttacacgtgagagagtaaagtgtgatctatcactattca |
188 |
Q |
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| T |
38656220 |
tgtaatttacacgtgagagagtaaagtctgattcatcacaattca |
38656264 |
T |
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