View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_71 (Length: 241)
Name: NF11655_low_71
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_71 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0351 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 17830297 - 17830184
Alignment:
| Q |
125 |
atattgaataatatttattgtgtgcatctcgacaaaatttaaccattggccaagtttattttattttgattattgtgtgcatctctatcacaattatata |
224 |
Q |
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| T |
17830297 |
atattgaataatacttatcttgtacatctatacaaaaattaaccattggccaagtttattttgttttgattattgtgtgcatctctatcacaattatata |
17830198 |
T |
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| Q |
225 |
ttttatcacaattc |
238 |
Q |
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| T |
17830197 |
ttttatcacaattc |
17830184 |
T |
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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 7822562 - 7822470
Alignment:
| Q |
149 |
catctcgacaaaatttaaccattggccaagtttattttattttgattattgtgtgcatctctatcacaattatatattttatcacaattcctt |
241 |
Q |
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| T |
7822562 |
catctctacaaaatttaacttttggccaagtgtacgttgttttgattattttgtgcatctctatcacaattatatattttatcacaattcctt |
7822470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 44126065 - 44126018
Alignment:
| Q |
194 |
ttattgtgtgcatctctatcacaattatatattttatcacaattcctt |
241 |
Q |
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| T |
44126065 |
ttattgtgtgcatctctatcacaattatatattttatcacaattcctt |
44126018 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 44126096 - 44126050
Alignment:
| Q |
108 |
attttgccaaactcgatatattgaataatatttattgtgtgcatctc |
154 |
Q |
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| T |
44126096 |
attttgccaaactcgatatattgattaatacttattgtgtgcatctc |
44126050 |
T |
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Target: scaffold0351 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 63 - 16
Alignment:
| Q |
190 |
ttgattattgtgtgcatctctatcacaattatatattttatcacaatt |
237 |
Q |
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| T |
63 |
ttgattattgtgtgcacctctatcacaattatatattttatcacaatt |
16 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 5553 - 5506
Alignment:
| Q |
190 |
ttgattattgtgtgcatctctatcacaattatatattttatcacaatt |
237 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5553 |
ttgattattgtgtgcacctctatcacaattatatattttatcacaatt |
5506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 13896 - 13849
Alignment:
| Q |
190 |
ttgattattgtgtgcatctctatcacaattatatattttatcacaatt |
237 |
Q |
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| T |
13896 |
ttgattattgtgtgcacctctatcacaattatatattttatcacaatt |
13849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 114798 - 114845
Alignment:
| Q |
190 |
ttgattattgtgtgcatctctatcacaattatatattttatcacaatt |
237 |
Q |
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| T |
114798 |
ttgattattgtgtgcacctctatcacaattatatattttatcacaatt |
114845 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 56339775 - 56339721
Alignment:
| Q |
178 |
gtttattttattttgattattgtgtgcatctctatcacaattatatattttatca |
232 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
56339775 |
gtttattttcttttgattattgtgtgtatctctatcacaattatatattctatca |
56339721 |
T |
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