View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_72 (Length: 240)
Name: NF11655_low_72
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37362624 - 37362701
Alignment:
| Q |
1 |
tgtgaaaaatattcttaactatttattggagggagagaaatatataaaataagataataaatagttgaatatattaca |
78 |
Q |
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| T |
37362624 |
tgtgaaaaatattcttaactatttattggagggagagaaatatataaaataagatattaaatagttgaatatattaca |
37362701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 37362786 - 37362846
Alignment:
| Q |
163 |
atattatttataggttagttagatagaaagaagagacatttggcagcatgtactttaaaac |
223 |
Q |
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| T |
37362786 |
atattatttataggttagttagataggaagaagaaacatttggcagcatgtactttaaaac |
37362846 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 47885138 - 47885090
Alignment:
| Q |
14 |
cttaactatttattggagggagagaaatatataaaataagataataaat |
62 |
Q |
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| T |
47885138 |
cttaattatttattggagagagagaaatatatgaaataagatattaaat |
47885090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 55703014 - 55703062
Alignment:
| Q |
14 |
cttaactatttattggagggagagaaatatataaaataagataataaat |
62 |
Q |
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| T |
55703014 |
cttaattatttattgcagagagagaaatatatgaaataagataataaat |
55703062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 45324114 - 45324164
Alignment:
| Q |
13 |
tcttaactatttattggagggagagaaatatataaaataagataataaata |
63 |
Q |
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|||||| ||||||||| | |||||||||||||||||||||||| |||||| |
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| T |
45324114 |
tcttaattatttattgcggagagagaaatatataaaataagatattaaata |
45324164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 13461082 - 13461131
Alignment:
| Q |
13 |
tcttaactatttattggagggagagaaatatataaaataagataataaat |
62 |
Q |
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|||||| ||||||||| | |||||||||||||||||||||||| ||||| |
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| T |
13461082 |
tcttaattatttattgtggagagagaaatatataaaataagatattaaat |
13461131 |
T |
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