View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11655_low_8 (Length: 639)
Name: NF11655_low_8
Description: NF11655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11655_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 195 - 639
Target Start/End: Original strand, 40380254 - 40380697
Alignment:
| Q |
195 |
tgtaataatgcaatggtgtgatt---taaggatatata--cagtatatatttgaaaactcatataataaatcatatgcatgggtaaaagtggaaattggt |
289 |
Q |
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| T |
40380254 |
tgtaataatgcaatggtgggattatttaaggatatatatacagtgtatattttaaaactcata--ataaaccatatgcatgggtaaaattggaaattgct |
40380351 |
T |
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| Q |
290 |
cttttttgtttcctgtatttcttctgtgaccacaaacatttccctccagttattatgtaacaaatcttatccataggagaaggagtgaagctaagcaata |
389 |
Q |
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| T |
40380352 |
ctttatt---tcctgtatttcttctgtgaccacaaacatttccttccagttattatgtaacaaatcttatccatagcagaaggagtgaagctaagcaata |
40380448 |
T |
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| Q |
390 |
tgcaaactaataagaccctcatgtaagttcttgttggccattaaaggcnnnnnnncaccactaaattaaagatggccacaagttgttcctacatggtttc |
489 |
Q |
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| T |
40380449 |
tgcacactaataagtcccacttgtaagtacttgttggccattaaaggcaaaaaa-caccactaaatcaaacatggccacaagttgttcctacatggtttc |
40380547 |
T |
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| Q |
490 |
taccaaattatcgatactaggttggacaggaggaagaagaaaagaagtaagaaacagaactccatttttcatatcagctcaacaacaatctgatgttaag |
589 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40380548 |
taccaaattatccatactaggttggacaggaggaagaagaaaagaagtaagaaacagaactccatttttcatatcagctcaacaacaatctgatgttaag |
40380647 |
T |
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| Q |
590 |
gaaacagatggtgtgaaagtaggagaagagaaagaaataccacaaaatca |
639 |
Q |
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| T |
40380648 |
gaaacagatggtgtgaaagtaggagaagagaaagaaataccacaaaatca |
40380697 |
T |
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