View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_11 (Length: 397)
Name: NF11656_high_11
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 37314958 - 37315326
Alignment:
| Q |
18 |
gttttctctcttagtccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccattagttgtattgcaaaacgaccaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37314958 |
gttttctctcttagtccaatgatcatacggaatagcgagcgcaaacatgaacacagtcataaagaagaatcccattagttgaattgcaaaacgaccaata |
37315057 |
T |
|
| Q |
118 |
acgtcgataaaagccaccgtgaaccagtatccgggaaccgttccacaaagtgctataagcgttgtcgctctagcaactttgaaaacttcatgaattgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37315058 |
acgtcgataaaagccaccgtgaaccagtatccgggaaccgttccacaaagtgctataagcgttgtcgctctagcaactttgaaaacttcatgaattgcat |
37315157 |
T |
|
| Q |
218 |
tcatatcttgtgctggtggaagccaaccaatactactataaatatctttttgaaaaagattcgaactataataagcaatatcaagaagaaaccaagtgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37315158 |
tcatatcttgtgctggtggaagccaaccaatactactataaatatctttttgaaaaagattcgaactataataagcaatatcaagaagaaaccaagtgga |
37315257 |
T |
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| Q |
318 |
agttgttccaagcagatgaagaccgtgtcttctaagaaactccttactaaacaaaccaaaactgttctt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37315258 |
agttgttccaagcagatgaagaccgtgtcttctaagaaactccttactaaacaaaccaaaactgttctt |
37315326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 33110087 - 33109959
Alignment:
| Q |
18 |
gttttctctcttagtccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccattagttgtattgcaaaacgaccaata |
117 |
Q |
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| T |
33110087 |
gttttctttcttagtccaatgatcataaggtatagctagagcaaacatgaagacggtcatgaagaagaaacccatcaattggatcgcaaaacgacccatg |
33109988 |
T |
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| Q |
118 |
acgtcgataaaagccaccgtgaaccagta |
146 |
Q |
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| T |
33109987 |
taatcgataaatgccactgtaaaccagta |
33109959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 16184973 - 16184850
Alignment:
| Q |
32 |
tccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccattagttgtattgcaaaacgaccaataacgtcgataaaagc |
131 |
Q |
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| T |
16184973 |
tccaatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgc |
16184874 |
T |
|
| Q |
132 |
caccgtgaaccagtatccgggaac |
155 |
Q |
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|||||||||||||| || ||||| |
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| T |
16184873 |
taccgtgaaccagtaacccggaac |
16184850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 30619916 - 30619979
Alignment:
| Q |
31 |
gtccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccatta |
94 |
Q |
| |
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||||| |||||||| |||||||| || ||||||||||| || ||||||||||| |||||||||| |
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| T |
30619916 |
gtccagtgatcataaggaatagcaagtgcaaacataaaaactgtcataaagaaaaatcccatta |
30619979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 16174389 - 16174512
Alignment:
| Q |
32 |
tccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccattagttgtattgcaaaacgaccaataacgtcgataaaagc |
131 |
Q |
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||||||||||||| || || || || |||||||| || |||||||| |||||||||||||| | ||| || || |||||||| || |||||||| || |
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| T |
16174389 |
tccaatgatcatatggtatggcaagagcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgc |
16174488 |
T |
|
| Q |
132 |
caccgtgaaccagtatccgggaac |
155 |
Q |
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|| ||||||||||| || ||||| |
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| T |
16174489 |
gactgtgaaccagtagcccggaac |
16174512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 16224363 - 16224240
Alignment:
| Q |
32 |
tccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccattagttgtattgcaaaacgaccaataacgtcgataaaagc |
131 |
Q |
| |
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||||||||||||| || || || || |||||||| || |||||||| |||||||||||||| | ||| || || |||||||| || |||||||| || |
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| T |
16224363 |
tccaatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgc |
16224264 |
T |
|
| Q |
132 |
caccgtgaaccagtatccgggaac |
155 |
Q |
| |
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|| ||||||||||| || ||||| |
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| T |
16224263 |
tactgtgaaccagtaacccggaac |
16224240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 30615162 - 30615225
Alignment:
| Q |
31 |
gtccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccatta |
94 |
Q |
| |
|
||||| |||||| | |||||||| | ||||||||||| || |||||||||||||||||||||| |
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| T |
30615162 |
gtccagtgatcaaaaggaatagcaattgcaaacataaaaactgtcataaagaagaatcccatta |
30615225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 30620144 - 30620229
Alignment:
| Q |
259 |
atatctttttgaaaaagattcgaactataataagcaatatcaagaagaaaccaagtggaagttgttccaagcagatgaagaccgtg |
344 |
Q |
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||||| ||||| ||||||||| ||| ||| | ||||||||||| | |||||| ||||| | ||||||||||||||| | |||||| |
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| T |
30620144 |
atatccttttggaaaagattctgactgtaaaatgcaatatcaagcaaaaaccatgtggatgctgttccaagcagatgcaaaccgtg |
30620229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 38894157 - 38894095
Alignment:
| Q |
30 |
agtccaatgatcatacggaatagcgagcgcaaacataaacacagtcataaagaagaatcccat |
92 |
Q |
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|||||| |||||||| ||||| || || |||||||| || ||||||||||||||||||||||| |
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| T |
38894157 |
agtccagtgatcatatggaatggcaagagcaaacatgaagacagtcataaagaagaatcccat |
38894095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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