View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_13 (Length: 346)
Name: NF11656_high_13
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 124436 - 124736
Alignment:
| Q |
41 |
taccagagcccatagattcacgctgagacttattctgccaaggaagcaaataattaggactgcatgaaacagtgaaaatcttgacaacagaattgaaagc |
140 |
Q |
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| T |
124436 |
taccagagcccatagattcacgctgagatttgttctgccaaggaagcaaataattaggactgcatgaaacagtgaaaatcttgacaacggaattgaaagc |
124535 |
T |
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| Q |
141 |
aagctcaacagcagtattagtagtatgtgtcaatgcggcggcgctgcgtggttgaatcttcttcc------------ttactcttactggtgatgttgtt |
228 |
Q |
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| T |
124536 |
aagctcaacagcagtattagtagtatgtgtcaatgcggcggcgctacgtggttgaatattcttcctttctcttcttattcctcttactgatgatgttgtt |
124635 |
T |
|
| Q |
229 |
gttatgaatgtttgattttgttgggtctgagtctgagtgtgagtgtgagtgtgaggaacaagtgaaaatgattgagaagcgagataacgagatgagaaag |
328 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124636 |
gttatgaatgtttgattttgttgggtatgagtctgagtctga---tgagtgtgaggaacaagtgaaaatgattgagaagcgagataacgagatgagaaaa |
124732 |
T |
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| Q |
329 |
catt |
332 |
Q |
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|||| |
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| T |
124733 |
catt |
124736 |
T |
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