View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_20 (Length: 257)
Name: NF11656_high_20
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 4401564 - 4401793
Alignment:
| Q |
18 |
cctacgttaataaaagttagatttccttcttgatttttggggaaaatcacctaatacagccttcaatggctcaatccttttctttgtagatttacttgat |
117 |
Q |
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| T |
4401564 |
cctacgttaataaaagttagatttccttcttgatttttggggaaaatcacctaatacagccttcaatggctcaatccttttctttgtagatttacttgat |
4401663 |
T |
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| Q |
118 |
aaccttccaactaatttatgtctacctatataggtagcacctaataccaattgaaacggtccataactcagtgtcattctaaagtctaaacataaaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4401664 |
aaccttccaactaatttatgtctacctatataggtagcacctaataccaattgaaacggtccataactcagtgtcattctaaagtctaaacataaaaacg |
4401763 |
T |
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| Q |
218 |
aagaaataaaaaccaacgttccagtctctg |
247 |
Q |
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| T |
4401764 |
atgaaataaaaaccaacgttccagtctctg |
4401793 |
T |
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