View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_21 (Length: 250)
Name: NF11656_high_21
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34594064 - 34594300
Alignment:
| Q |
1 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
100 |
Q |
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| T |
34594064 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
34594163 |
T |
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| Q |
101 |
aaaagggaaaagaaagtaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagaggaagatt |
200 |
Q |
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| T |
34594164 |
aaaagggaaaagaaagcaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagaggaagatt |
34594263 |
T |
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| Q |
201 |
tggatttggttttgtctttgaatgatttggctcgtct |
237 |
Q |
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| T |
34594264 |
tggatttggttttgtctttgaatgatttggctcgtct |
34594300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34622073 - 34622291
Alignment:
| Q |
1 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
100 |
Q |
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| T |
34622073 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
34622172 |
T |
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| Q |
101 |
aaaagggaaaagaaagtaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagaggaagatt |
200 |
Q |
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| T |
34622173 |
aaaagggaaaagaaagcaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagagaaagatt |
34622272 |
T |
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| Q |
201 |
tggatttggttttgtcttt |
219 |
Q |
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| T |
34622273 |
tggatttggttttgtcttt |
34622291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34749512 - 34749730
Alignment:
| Q |
1 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34749512 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
34749611 |
T |
|
| Q |
101 |
aaaagggaaaagaaagtaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagaggaagatt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34749612 |
aaaagggaaaagaaagcaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagagaaagatt |
34749711 |
T |
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| Q |
201 |
tggatttggttttgtcttt |
219 |
Q |
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||||||||||||||||||| |
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| T |
34749712 |
tggatttggttttgtcttt |
34749730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34738311 - 34738547
Alignment:
| Q |
1 |
ttctgcttgttcagcttctgttggtggttcaaagagtattgctttacttgctcctgttgtttttatgatacatagtgttgttaaggaactttttgaattg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
34738311 |
ttctgcttgttcagcttttgttggtggttcaaagagtattgctttacttgctcctgttgtttttataatacatagtgttgttaaggaactttttgaagtg |
34738410 |
T |
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| Q |
101 |
aaaagggaaaagaaagtaatgaaggaagtgaaatctttggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagaggaagatt |
200 |
Q |
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|||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34738411 |
aaaaaggagaagaaagtaatgaaggaagtgaaatctctggttgatatgattcttgggtttatgagtatttgttgtagtaaaatttctgaagagaaagatt |
34738510 |
T |
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| Q |
201 |
tggatttggttttgtctttgaatgatttggctcgtct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34738511 |
tggatttggttttgtctttgaatgatttggctcgtct |
34738547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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