View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_26 (Length: 238)
Name: NF11656_high_26
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 46464485 - 46464266
Alignment:
| Q |
16 |
gaaaaatccttacatacaaaacatttgcgaagcatgtcaactaatattgtgtcgcgtgaccagcaagaatgtatgtgccgtcaaataacaaagatatacc |
115 |
Q |
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| T |
46464485 |
gaaaaatccttacatacaaaacatttgcgaagcatgtcaactaatattgtgtcgcgtgaccagcaagaatgtatgtgccgtcaaataacaaagatatacc |
46464386 |
T |
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| Q |
116 |
aaaataaattactctcaactgtaatgtgtcataaatca----------tttaagaactgtgtttgaaaggacctaaaaggaaatttaattataaatttta |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46464385 |
aaaataaaatactctcaactgtaatgtgtcataaatcatgataattcttttaagaactgtgtttgaaaggacctaaaaggaaatttaattataaatttta |
46464286 |
T |
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| Q |
206 |
tcctttttaatcaacaaata |
225 |
Q |
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|||||||||||||||||||| |
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| T |
46464285 |
tcctttttaatcaacaaata |
46464266 |
T |
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