View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_high_5 (Length: 561)
Name: NF11656_high_5
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 165 - 549
Target Start/End: Original strand, 20495596 - 20495979
Alignment:
| Q |
165 |
attttaatgcatatattatgaaaataatcacgtgccttacttgtcaattggtcacccnnnnnnnnggtccgcttcctgcttctctgcacaactttttcaa |
264 |
Q |
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| T |
20495596 |
attttaatgcatatattatgaaaataatcacgtgccttagttgtcaatcggtcacccttttttttggtccgcttcctgcttctctgcacaactttttcaa |
20495695 |
T |
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| Q |
265 |
ctacaaataattttctctttgttcgaggacgacctttacgcgtgactcgcaatggactatggatttcaataatcgcatcctcatcccttcgaataattct |
364 |
Q |
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| T |
20495696 |
ctacagatcattttctctttgtttgaggacgacctttacgcgtgactcgcaatggactacggatttcaataatcgcatcttcatcccttcgaataattct |
20495795 |
T |
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| Q |
365 |
atttggactcgagtcagtgttggaacttctgttgttacttgtagcacccaaacacagcaagctagatttgaattcatgaagtgtttcatggagagccata |
464 |
Q |
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| T |
20495796 |
atttggactcgagtcagtgttggaacttctgttgttacttgtagcacccaaacatagcaagctagatttgaattcatgaagtgtttcatggagagccata |
20495895 |
T |
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| Q |
465 |
gttttatcttctttttctgcagccacttcagcaaccacatagaaatgcttgcacaagctgtcaaacctatccatttgtggcttca |
549 |
Q |
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| T |
20495896 |
gttttatcttc-ttttctgaagccacttcagcaacctcatagaaatgctttcacaagctgtcaaacctatccatttgtggcttca |
20495979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 52969083 - 52969217
Alignment:
| Q |
151 |
ttggttaatacttcattttaatgcatatattatgaaaataatcacgtgccttacttgtcaattggtcacccnnnnnnnnggtccgcttcctgcttctctg |
250 |
Q |
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| T |
52969083 |
ttggttaatacttagcattaacgcatatattatgagaataaacatgtgctttagttgtcaacttgtcacccactttattggtatgcttcctgcatctcta |
52969182 |
T |
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| Q |
251 |
cacaactttttcaactacaaataattttctctttg |
285 |
Q |
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| T |
52969183 |
cataactttttcaactacaaataattttctctttg |
52969217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 549
Target Start/End: Original strand, 18082754 - 18082823
Alignment:
| Q |
480 |
tctgcagccacttcagcaaccacatagaaatgcttgcacaagctgtcaaacctatccatttgtggcttca |
549 |
Q |
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| T |
18082754 |
tctgccgctacttcagcaacctcgtagaaatgcttgcataacttgtcaaacctgtccatttgtggcttca |
18082823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 549
Target Start/End: Original strand, 33358495 - 33358564
Alignment:
| Q |
480 |
tctgcagccacttcagcaaccacatagaaatgcttgcacaagctgtcaaacctatccatttgtggcttca |
549 |
Q |
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| T |
33358495 |
tctgccgctacttcagcaacctcgtagaaatgcttgcataacttgtcaaacctgtccatttgtggcttca |
33358564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 549
Target Start/End: Complemental strand, 38778618 - 38778515
Alignment:
| Q |
446 |
tgtttcatggagagccatagttttatcttctttttctgcagccacttcagcaaccacatagaaatgcttgcacaagctgtcaaacctatccatttgtggc |
545 |
Q |
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| T |
38778618 |
tgtttcatggagtgccttagttgcatcttcagattcagcggctacttcagcaatctcatagaaatgcttgcacaatttgtcaaacctgtccatctttggc |
38778519 |
T |
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| Q |
546 |
ttca |
549 |
Q |
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|||| |
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| T |
38778518 |
ttca |
38778515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 37602599 - 37602657
Alignment:
| Q |
491 |
ttcagcaaccacatagaaatgcttgcacaagctgtcaaacctatccatttgtggcttca |
549 |
Q |
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| T |
37602599 |
ttcagcaacctcgtagaagtgcttgcataacttgtcaaacctgtccatttgtggcttca |
37602657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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