View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_1 (Length: 854)
Name: NF11656_low_1
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_1 |
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| [»] scaffold0768 (2 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 59 - 441
Target Start/End: Original strand, 5 - 384
Alignment:
| Q |
59 |
cgccggtgaaagtgctctgatcataaaatgcgaataaagatttttgcatgagatattaggtgcaaaggtggataaaatcctaagacttgtgttatttttg |
158 |
Q |
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| T |
5 |
cgccggtgaaagtgctctgatcataaaatgcaaataaagatttttgcatgagatattaggtgcaaaggtggataaaatcctaagacgtgtgttaagattg |
104 |
T |
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| Q |
159 |
tttcttaagaaaagtttttggtgaattaggctttgatactattattgataaaggtgaacaagtttctaacaatttgttaccatattgttctgtaacttga |
258 |
Q |
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| T |
105 |
tttcttaagaaaagttgttaatgaattaggctttgatactatt---gataaaggtgaacaagtttctaacaatttgttaccatattgttctgtaacttga |
201 |
T |
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| Q |
259 |
tcatggcaaggttaagttatatctaaaggaggaagatttattattgagagaaaaaaggtggtaagatgttgctttgaaaaaggttatacaatgtgtggct |
358 |
Q |
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| T |
202 |
tcatggcaaggttaagttatatataaaggaggaagatatattattgagagaaaaagggtggtaagatgttgctttgaaaaaggttatacaatgtgtggct |
301 |
T |
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| Q |
359 |
atgtgtctatggagtggatgaaaacttattttataggtataatacaatcaattctcagcacttgcagcaaaaggacaaacata |
441 |
Q |
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| T |
302 |
atgtgtctatggagtggatgaaaacttattttataggtataatacaatcaattctcagcacttgcaacaaaaggacaaacata |
384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0768; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 449 - 842
Target Start/End: Original strand, 460 - 851
Alignment:
| Q |
449 |
tgaactttctttatttcgattttattttttgtgttgcaatagatacaatgaaaatgaataaaacaaaagtattatannnnnnnn-ataaagcacataaaa |
547 |
Q |
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| T |
460 |
tgaactttctttatttcgaattttttttgtgtgttgcaatagatacaatgaaaatgaatgaaacaaaagtattataattttttttataaagcacacaaaa |
559 |
T |
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| Q |
548 |
cgatgtttttgtcacatttaaacaaattttgtcattggatttcatatc-acgttgattagaaaaattgtcacatcaccactttttaaatttaaaaatacg |
646 |
Q |
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| T |
560 |
caatgtttttgtcacattttaacaaattttgtcattggatttcatgtctacgttgattaaaaaaattgtcacatcaccactttttaaatttaaaatgt-- |
657 |
T |
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| Q |
647 |
agggagagaccaaaaatctgaatttaaaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattggtccacattataggatatcaaaat |
746 |
Q |
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| T |
658 |
--ggaaagaccaaaaatctgaatttaaaagattggagactggttttatgagcgtggaaaaatgtaggttaaaattgatccacattatagaataccgaaat |
755 |
T |
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| Q |
747 |
tgatacagaaaaaatcgaatatgataatttaagagaagtacattccaaaatctccaatcaataccattaaatcaacctaatcaagttgatgtccat |
842 |
Q |
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| T |
756 |
tgatacaggaaaaatcgaatatgataatttaagaggagtacatttcaaaatttccaatcaataccatcaaatcaacccaattaagttgatgcccat |
851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 6845868 - 6845795
Alignment:
| Q |
276 |
tatatctaaaggaggaagatttattattgagagaa-aaaaggtggtaagatgttgcttt-gaaaaaggttatac |
347 |
Q |
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| T |
6845868 |
tatatataaaggaggaagatttattattgagagaaaaaaatgtggtaaggtgttggtttggaagaaggttatac |
6845795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 646 - 722
Target Start/End: Complemental strand, 18235366 - 18235290
Alignment:
| Q |
646 |
gagggagagaccaaaaatctgaatttaaaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattg |
722 |
Q |
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| T |
18235366 |
gagggaaagactaaatatctgaatttaaaagataggagaatagtgttatgagtacacaaaaatgtaggtcaaaattg |
18235290 |
T |
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