View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_10 (Length: 421)
Name: NF11656_low_10
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 55011423 - 55011836
Alignment:
| Q |
1 |
ggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggggataacatcaagtttggggttccgat |
100 |
Q |
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| T |
55011423 |
ggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggtgataacatcaagtttgggtttccgat |
55011522 |
T |
|
| Q |
101 |
ggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgctttggtcgcaattcgttggagt |
200 |
Q |
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| T |
55011523 |
ggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgctttggtcgcaattcgttggagt |
55011622 |
T |
|
| Q |
201 |
actgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtatttttcattttactcaatcgttgggttcactcactcacgg------ |
294 |
Q |
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| T |
55011623 |
actgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtatttttcattttactcaatcgttgggttcactcactcacggtcacgg |
55011722 |
T |
|
| Q |
295 |
acttttcac-tcttccttaatttannnnnnnggttgcataatttatttacggtattcata---aaatcaatttattgaaatggaaaatcatcgtgcgttc |
390 |
Q |
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| T |
55011723 |
acttttcacctcttccttaatttatttttttggttgcataatttatttacggtattcattcataaatcaatttattgaaatggaaaatcatcgtgcgttc |
55011822 |
T |
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| Q |
391 |
ttcctagataactg |
404 |
Q |
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| T |
55011823 |
ttcctagataactg |
55011836 |
T |
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 44151980 - 44152068
Alignment:
| Q |
57 |
ggttactacgacgccggggataacatcaagtttggggttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttgg |
145 |
Q |
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| T |
44151980 |
ggttactacgacgccggcgacaacataaagttcgggtttccgatggcgtttacaacgacgatgttagcttggagtgtgattgattttgg |
44152068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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