View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11656_low_12 (Length: 347)
Name: NF11656_low_12
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 26017996 - 26017683
Alignment:
| Q |
15 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtacttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
26017996 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaaaaagtcatgatgaggttcaattctgagtacttt |
26017897 |
T |
|
| Q |
115 |
ggtctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
214 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017896 |
ggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
26017797 |
T |
|
| Q |
215 |
tcaacatatcctccct----nnnnnnnttcaaaactaatttagtacctttaagatatcctaaactacaaacaaaggtttcaattacgaaagacaaacagg |
310 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | |||||||| | || |||||||||| ||||||||||||||||| || ||||||| | |
|
|
| T |
26017796 |
tctacatatcctccctacaaaataaatttcaaaactaactaagtaccttcatgagatcctaaact----acaaaggtttcaattaccaacgacaaacgga |
26017701 |
T |
|
| Q |
311 |
aaaatcgccatcatcatc |
328 |
Q |
| |
|
||||| || ||||||||| |
|
|
| T |
26017700 |
aaaattgctatcatcatc |
26017683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 26003247 - 26003035
Alignment:
| Q |
18 |
aacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggt |
117 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26003247 |
aacatcgcaattaattggtcaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatgatgaggttcaattctgagtactttggt |
26003148 |
T |
|
| Q |
118 |
ctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatca |
217 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26003147 |
ctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcg |
26003048 |
T |
|
| Q |
218 |
acatatcctccct |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26003047 |
acatatcctccct |
26003035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 30374471 - 30374295
Alignment:
| Q |
46 |
taccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttc |
145 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
146 |
atgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcaacata |
222 |
Q |
| |
|
| ||||| || ||||| | ||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| |
|
|
| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcgacataaatcaacata |
30374295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University