View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_14 (Length: 336)
Name: NF11656_low_14
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 10118672 - 10118354
Alignment:
| Q |
3 |
cagagacacggataactagttagtaatatcaagtgaaataatggtttgttaaaattccgctatgctacattgctatagctgctatctaactcacaatgta |
102 |
Q |
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| T |
10118672 |
cagagacacggataactagttagtaatatcaagtgaaataatggtttgttaaaattccactatgctacattgctatagctgctatctaacccacaatgta |
10118573 |
T |
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| Q |
103 |
ttaaatagtttatcacataaaaatagtgatttgttcaaattctactatgttatacagttatatccacttttaacatcctaatatccttgatacaataaca |
202 |
Q |
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| T |
10118572 |
ttaaatagtttatcacataaaaatagtgatttgttcaaattctactatgttatacagttatatccacttttaacatcctaatatccttgatacaataaca |
10118473 |
T |
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| Q |
203 |
tgctataaagcaaaatatgtttgattatatagacgctagttgcgcacataaatcggcatagttcatggcttgcaaggcaggaattgaagataaagtattc |
302 |
Q |
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| T |
10118472 |
tgctataaagcaaaatatgtttgattatatagacgctagttgcgcacataaatcggcatagttcatggcttgcaaggcaggaattgaagataaagtattc |
10118373 |
T |
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| Q |
303 |
cagttttgatgagaaatgt |
321 |
Q |
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| T |
10118372 |
cagttttgatgagaaatgt |
10118354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 10125119 - 10125044
Alignment:
| Q |
181 |
taatatccttgatacaataacatgctataaagcaaaatatgtttgattatatagacgctagttgcgcacataaatc |
256 |
Q |
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| T |
10125119 |
taatatccttgatacagtagcatgctataacgcaaaatctgttcaattatatagacattagtggcacacataaatc |
10125044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 50376278 - 50376320
Alignment:
| Q |
39 |
aataatggtttgttaaaattccgctatgctacattgctatagc |
81 |
Q |
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| T |
50376278 |
aataacggtttgttaaaattccgctatgctacagtgctatagc |
50376320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 30580449 - 30580482
Alignment:
| Q |
124 |
aatagtgatttgttcaaattctactatgttatac |
157 |
Q |
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| T |
30580449 |
aatagtgatttgttcaaattctgctatgttatac |
30580482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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