View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_15 (Length: 326)
Name: NF11656_low_15
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 7883661 - 7883360
Alignment:
| Q |
9 |
gcaaagggtgtgagaattaatagtgacaacattgaaagacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatat |
108 |
Q |
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| T |
7883661 |
gcaaaaggtgtgagaattaatagtgacaacattgaaagacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatat |
7883562 |
T |
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| Q |
109 |
tcctaaatacaaatgccaaatttgatatcatagctcccataaatcctgaaacaagaattgattcatttagagtattgatattgaactttatatttatgtg |
208 |
Q |
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| T |
7883561 |
tcctaaatacaaatgccaaatttgatatcatagctcccataaatcctgaaacaagaattgattcatttagagtattgatattgaactttatatttatgtg |
7883462 |
T |
|
| Q |
209 |
aataattgtttgtgatcttattcttaccagtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggta |
308 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883461 |
aataattgtttgtgatcttattcctaccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggta |
7883362 |
T |
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| Q |
309 |
aa |
310 |
Q |
| |
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| T |
7883361 |
aa |
7883360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 54986151 - 54985998
Alignment:
| Q |
8 |
agcaaagggtgtgagaattaatagtgacaacattgaaagacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatata |
107 |
Q |
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| T |
54986151 |
agcaaaaggggtgagaagcaatagagataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatata |
54986052 |
T |
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| Q |
108 |
ttcctaaatacaaatgccaaatttgatatcatagctcccataaatcctgaaaca |
161 |
Q |
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| T |
54986051 |
ttcctaaacacaaaggccacattggatatcatagcccccataaaccctgaaaca |
54985998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 54985877 - 54985814
Alignment:
| Q |
230 |
tcttaccagtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattgg |
293 |
Q |
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|||||||| ||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
54985877 |
tcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattgg |
54985814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 18396683 - 18396534
Alignment:
| Q |
9 |
gcaaagggtgtgagaattaatagtgacaacattgaaagacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatat |
108 |
Q |
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|||||||||||||||||| || ||||| || || | ||||||||| || ||||||||||||||| | |||| ||||| || || || ||||| || | |
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| T |
18396683 |
gcaaagggtgtgagaattgcaagggacaaaatagataaacaagcatagtaattcattccactaacagactttcccttcatcccctttttcgagaagatgt |
18396584 |
T |
|
| Q |
109 |
tcctaaatacaaatgccaaatttgatatcatagctcccataaatcctgaa |
158 |
Q |
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| | || |||||||||| ||||||||||||||| |||||||| |||||| |
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| T |
18396583 |
tgcggaacacaaatgccagatttgatatcatagcccccataaaacctgaa |
18396534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 18396224 - 18396163
Alignment:
| Q |
232 |
ttaccagtcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattgg |
293 |
Q |
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|||||| ||||||||||||||||||| || |||||||| |||||||| |||||||| ||||| |
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| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattgg |
18396163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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