View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11656_low_17 (Length: 275)

Name: NF11656_low_17
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11656_low_17
NF11656_low_17
[»] chr1 (4 HSPs)
chr1 (4-261)||(2004033-2004290)
chr1 (190-239)||(18118495-18118544)
chr1 (122-239)||(30931126-30931243)
chr1 (127-240)||(17177355-17177468)
[»] chr3 (12 HSPs)
chr3 (133-240)||(4481390-4481497)
chr3 (58-239)||(54563052-54563233)
chr3 (122-237)||(12528115-12528230)
chr3 (1-47)||(6007710-6007756)
chr3 (7-47)||(17788577-17788617)
chr3 (7-47)||(19097019-19097059)
chr3 (169-239)||(31662474-31662544)
chr3 (7-104)||(16741065-16741162)
chr3 (172-240)||(6007517-6007585)
chr3 (127-199)||(14484008-14484080)
chr3 (172-240)||(17788742-17788810)
chr3 (172-240)||(19097184-19097252)
[»] chr6 (6 HSPs)
chr6 (121-239)||(16344317-16344435)
chr6 (187-239)||(17753790-17753842)
chr6 (121-239)||(16320127-16320245)
chr6 (4-114)||(18689656-18689766)
chr6 (125-236)||(17393491-17393602)
chr6 (169-221)||(26906101-26906153)
[»] chr7 (4 HSPs)
chr7 (139-240)||(8863718-8863819)
chr7 (133-200)||(29961026-29961093)
chr7 (1-104)||(13016598-13016701)
chr7 (169-221)||(13016481-13016533)
[»] chr5 (5 HSPs)
chr5 (78-239)||(26679188-26679349)
chr5 (78-239)||(26950795-26950956)
chr5 (1-47)||(22290795-22290841)
chr5 (169-239)||(13573301-13573371)
chr5 (68-104)||(22787722-22787758)
[»] scaffold0013 (1 HSPs)
scaffold0013 (124-236)||(42609-42721)
[»] chr4 (6 HSPs)
chr4 (187-239)||(28859341-28859393)
chr4 (1-47)||(30857781-30857827)
chr4 (121-239)||(34216148-34216266)
chr4 (9-47)||(55226039-55226077)
chr4 (169-221)||(14262608-14262660)
chr4 (172-240)||(30857952-30858020)
[»] chr2 (2 HSPs)
chr2 (133-197)||(13708792-13708856)
chr2 (169-239)||(11500892-11500962)
[»] chr8 (5 HSPs)
chr8 (1-47)||(14504140-14504186)
chr8 (91-239)||(13813139-13813287)
chr8 (172-240)||(14504311-14504379)
chr8 (172-240)||(15991891-15991959)
chr8 (1-41)||(15992090-15992130)
[»] scaffold0303 (1 HSPs)
scaffold0303 (187-239)||(12748-12800)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 2004290 - 2004033
Alignment:
Q  4 gtcttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcgagcgaatgattaattcattttggtggggtc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004290 gtcttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcgagcgaatgattaattcattttggtggggtc 2004191  T
Q  104 acggtcgtagtacagctcgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatt 203  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004190 acggtcgtagtacagctcgaggaataaattggttaagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatt 2004091  T
Q  204 taatttggctatgttaggcaagcaagggtggaaattttaaatggataccgagtctctg 261  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2004090 taatttggctatgttaggcaagcaagggtggaaattttaaacggataccgagtctctg 2004033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 18118495 - 18118544
Alignment:
Q  190 gatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  18118495 gatctttcggcgtttaatttggcgatgttaggcaagaaagggtggaaatt 18118544  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 30931243 - 30931126
Alignment:
Q  122 gaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttagg 221  Q
    |||||||||| ||||| |||||||| |||||||||||||||||  || | |||||  | || || ||||| ||| | || |||||| | |||||||| ||    
T  30931243 gaggaataaactggttaagttgggaaaaattatcaatgcataaaaccaacggaggcttaggatttaaagaccttacagcttttaatcttgctatgttggg 30931144  T
Q  222 caagcaagggtggaaatt 239  Q
     || ||||||||||||||    
T  30931143 taaacaagggtggaaatt 30931126  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 17177355 - 17177468
Alignment:
Q  127 ataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagc 226  Q
    ||||| ||| |||||||||||||| | || ||||||||  | || || || ||||| ||||| ||||| ||||| || ||| | || |||||||| ||||    
T  17177355 ataaactggctgagttgggagaaactgtccatgcataaaactcacgggggaatgggtttcaaggatctctcggcgttcaatcttgcgatgttaggtaagc 17177454  T
Q  227 aagggtggaaattt 240  Q
    ||| ||||||||||    
T  17177455 aagcgtggaaattt 17177468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 4481497 - 4481390
Alignment:
Q  133 tggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggt 232  Q
    ||||| |||||||| || ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || ||| | || ||||| || ||||||||||    
T  4481497 tggttaagttgggaaaagttatccatgcataagtcccatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggt 4481398  T
Q  233 ggaaattt 240  Q
    ||||||||    
T  4481397 ggaaattt 4481390  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 54563233 - 54563052
Alignment:
Q  58 ttgattactgctatcgagcgaatgattaattcattttggtggggtcacggtcgtagtacagctcgaggaataaattggttgagttgggagaaattatcaa 157  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| ||  | | |||   | |||| || ||||||||||||||||| ||  |||| |    
T  54563233 ttgattacttctatcgagagaatgattaattcattttggtggggtcatggcagaaatactcgtagaggcattaattggttgagttgggaaaagctatcga 54563134  T
Q  158 tgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    | |||||   |||||| ||| |||| ||||| ||  | ||||| || ||  | || ||||| ||||||||||||||||||||    
T  54563133 ttcataaaatccatgggggtttgggattcaaggacttatcggctttcaaccttgcgatgttgggcaagcaagggtggaaatt 54563052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 12528230 - 12528115
Alignment:
Q  122 gaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttagg 221  Q
    |||| ||||||||| | |||||||||||||| || ||||||||  | ||||| || ||||| ||||| ||||| ||||| || ||| | || ||||||||    
T  12528230 gaggtataaattggctaagttgggagaaattgtccatgcataaaactcatgggggaatgggtttcaatgatctctcggctttcaatcttgcgatgttagg 12528131  T
Q  222 caagcaagggtggaaa 237  Q
     ||||||| |||||||    
T  12528130 taagcaagcgtggaaa 12528115  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6007756 - 6007710
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  6007756 tctgttttgcaggctattccttcttatgtgatgagtatctttcagct 6007710  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 17788577 - 17788617
Alignment:
Q  7 ttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  17788577 ttgcaggctattccttcttatgtgatgagtatctttcagct 17788617  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19097019 - 19097059
Alignment:
Q  7 ttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  19097019 ttgcaggctattccttcttatgtgatgagtatctttcagct 19097059  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31662544 - 31662474
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    |||||||||||||| ||||| ||||| || || |||||||| |||||||| || || ||||| ||||||||    
T  31662544 catggaggtatgggtttcaaggatctctccgcttttaatttagctatgttggggaaacaaggatggaaatt 31662474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 16741162 - 16741065
Alignment:
Q  7 ttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcgagcgaatgattaattcattttggtggggtca 104  Q
    |||||||| ||||| |||||||| |||||||| ||||| |||||| | ||| |||| | | | ||||||   || || ||||||||||||||||||||    
T  16741162 ttgcaggcaattccttcttatgttatgagtattttccaactgccaacgactctgataaattcaatcgagaagataatgaattcattttggtggggtca 16741065  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 6007585 - 6007517
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  6007585 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 6007517  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 14484008 - 14484080
Alignment:
Q  127 ataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcgg 199  Q
    |||||||||||||||||||| || || || ||||| || || ||||| || ||||| ||||| ||||||||||    
T  14484008 ataaattggttgagttgggaaaagttgtccatgcacaaatctcatgggggaatgggtttcaaggatctttcgg 14484080  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 17788742 - 17788810
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  17788742 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 17788810  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 19097184 - 19097252
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  19097184 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 19097252  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 16344317 - 16344435
Alignment:
Q  121 cgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttag 220  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||  || ||||||| ||||| |||||||| |||||||  |||||| | || |||||||    
T  16344317 cgaggaataaattggttaagttgggagaaattatctatgcacaaaaccaatggaggaatgggattcaaagacctttcgggttttaatcttgccatgttag 16344416  T
Q  221 gcaagcaagggtggaaatt 239  Q
    | || ||||| ||||||||    
T  16344417 gaaaacaaggttggaaatt 16344435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 17753842 - 17753790
Alignment:
Q  187 aaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  17753842 aaagatctttcggcgtttaatttggcgatgttaggcaagaaagggtggaaatt 17753790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 16320127 - 16320245
Alignment:
Q  121 cgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttag 220  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||  || ||||||| ||| | |||||||| ||| || | |||||  | || |||||||    
T  16320127 cgaggaataaattggttaagttgggagaaattatctatgcacaaaaccaatggaggaatgagattcaaagaccttacgacttttaaccttgccatgttag 16320226  T
Q  221 gcaagcaagggtggaaatt 239  Q
    | || ||||| ||||||||    
T  16320227 gaaaacaaggttggaaatt 16320245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 18689656 - 18689766
Alignment:
Q  4 gtcttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcgagcgaatgattaattcattttggtggggtc 103  Q
    |||||||| ||||||||||| || || |||||||| |||||||||||||||| ||| |||| | | ||||    |||||| ||||| ||||| |||||||    
T  18689656 gtcttgcaagctattccatcatacgttatgagtatattccagctgccatctaatttaattaattccatcgtaaaaatgatgaattctttttgatggggtc 18689755  T
Q  104 acggtcgtagt 114  Q
    ||| |||||||    
T  18689756 acgatcgtagt 18689766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 17393602 - 17393491
Alignment:
Q  125 gaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaa 224  Q
    |||| |||||||| || | ||| ||||| || |||||||| || || ||||||||||| || ||||| ||||| || || ||| |||  |||||||| ||    
T  17393602 gaatcaattggttaagctaggaaaaattgtctatgcataaatctcaaggaggtatgggttttaaagacctttcagctttcaatatggacatgttaggtaa 17393503  T
Q  225 gcaagggtggaa 236  Q
    ||||||||||||    
T  17393502 gcaagggtggaa 17393491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 26906101 - 26906153
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttagg 221  Q
    |||||||||||||| ||||||||||| || || |||||||| |||||| ||||    
T  26906101 catggaggtatgggtttcaaagatctctccgcttttaatttagctatgctagg 26906153  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 8863819 - 8863718
Alignment:
Q  139 agttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaat 238  Q
    |||||||| || ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || ||| | || ||||| || ||||||||||||||||    
T  8863819 agttgggaaaagttatccatgcataagtcccatggtggaatggggttcaaggatctttcggctttcaatcttgcgatgttgggaaagcaagggtggaaat 8863720  T
Q  239 tt 240  Q
    ||    
T  8863719 tt 8863718  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 29961026 - 29961093
Alignment:
Q  133 tggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggc 200  Q
    ||||| |||||||| || |||||||||||||||||||| || || ||||||||||| |||||||||||    
T  29961026 tggttaagttgggaaaagttatcaatgcataagtcccacggtggaatggggttcaaggatctttcggc 29961093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13016701 - 13016598
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatcttccagctgccatctactttgattactgctatcgagcgaatgattaattcattttggtggg 100  Q
    ||||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | ||| |||| | | | ||||||   ||||| ||||||||||||||||    
T  13016701 tctgttttgcaggcaattccttcttatgttatgagtattttccaactgccaacgactctgataaattcaatcgagaagatgatgaattcattttggtggg 13016602  T
Q  101 gtca 104  Q
    ||||    
T  13016601 gtca 13016598  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 13016533 - 13016481
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttagg 221  Q
    |||||||||||||| |||||||||||||| || |||||||| |||||| ||||    
T  13016533 catggaggtatgggcttcaaagatctttccgcttttaatttagctatgctagg 13016481  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 26679188 - 26679349
Alignment:
Q  78 aatgattaattcattttggtggggtcacggtcgtagtacagctcgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggt 177  Q
    |||||| || || |||||||||||||||||||||| |||   ||  || ||  ||||| | |||||||| ||| ||||  |||||||| | || ||||||    
T  26679188 aatgatgaactctttttggtggggtcacggtcgtactacttatcatggcatccattggctaagttgggaaaaactatcggtgcataagactcaaggaggt 26679287  T
Q  178 atggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    ||||| |||||||| |||||||| || |||||||||||||| || |||||||| ||||||||    
T  26679288 atgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaaatt 26679349  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 26950795 - 26950956
Alignment:
Q  78 aatgattaattcattttggtggggtcacggtcgtagtacagctcgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggt 177  Q
    |||||| || || |||||||||||||||||||||| |||   ||  || ||  ||||| | |||||||| ||| ||||  |||||||| | || ||||||    
T  26950795 aatgatgaactctttttggtggggtcacggtcgtactacttatcatggcatccattggctaagttgggaaaaactatcggtgcataagactcaaggaggt 26950894  T
Q  178 atggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    ||||| |||||||| |||||||| || |||||||||||||| || |||||||| ||||||||    
T  26950895 atgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaaatt 26950956  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22290795 - 22290841
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  22290795 tctgttttgcaggctattccttcttatgtgatgagtatctttcagct 22290841  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 13573301 - 13573371
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    ||||| |||||| |||||||||||||  ||||||||||| |  ||||||| || |||||||| ||||||||    
T  13573301 catggcggtatgcggttcaaagatctcacggcatttaatctctctatgttgggtaagcaaggatggaaatt 13573371  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 22787758 - 22787722
Alignment:
Q  68 ctatcgagcgaatgattaattcattttggtggggtca 104  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22787758 ctatcgacagaatgattaattcattttggtggggtca 22787722  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 42609 - 42721
Alignment:
Q  124 ggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggca 223  Q
    ||||| ||| ||||||| ||||| || || || |||||||| || || ||||||||||| || ||||||||||  || || ||| ||||||||||||| |    
T  42609 ggaatcaataggttgagctgggaaaatttgtcgatgcataaatctcaaggaggtatgggttttaaagatcttttagctttcaatctggctatgttaggta 42708  T
Q  224 agcaagggtggaa 236  Q
    |||||||||||||    
T  42709 agcaagggtggaa 42721  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 28859341 - 28859393
Alignment:
Q  187 aaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  28859341 aaagatcattcggcgtttaatttggcgatgttaggcaagcaagggtggaaatt 28859393  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30857781 - 30857827
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  30857781 tctgttttgcaggctattccttcttatgtgatgagtatctttcagct 30857827  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 34216266 - 34216148
Alignment:
Q  121 cgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttag 220  Q
    |||||||||| ||| || ||||||||||||||||| ||||| ||  || ||||||| |||||||||||||  ||| || | |||||  | || |||||||    
T  34216266 cgaggaataatttgattaagttgggagaaattatctatgcacaaaaccaatggaggaatggggttcaaaggccttacgacttttaaccttgccatgttag 34216167  T
Q  221 gcaagcaagggtggaaatt 239  Q
    | || ||||| ||||||||    
T  34216166 gaaaacaaggttggaaatt 34216148  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 55226039 - 55226077
Alignment:
Q  9 gcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  55226039 gcaggctattccttcttatgtgatgagtatctttcagct 55226077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 14262608 - 14262660
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttagg 221  Q
    |||||||||||||| ||||||||||| || || |||||||| |||||| ||||    
T  14262608 catggaggtatgggtttcaaagatctctctgcttttaatttagctatgctagg 14262660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 30857952 - 30858020
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  30857952 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 30858020  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 13708856 - 13708792
Alignment:
Q  133 tggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttc 197  Q
    ||||| |||||||||||| | || ||||||||||||||||| |||||||||||||| ||||||||    
T  13708856 tggttaagttgggagaaactgtctatgcataagtcccatggtggtatggggttcaaggatctttc 13708792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 11500892 - 11500962
Alignment:
Q  169 catggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    |||||||||||||| ||||||||||| || || |||||||| |||||| |||| || || || ||||||||    
T  11500892 catggaggtatgggtttcaaagatctctccgcttttaatttagctatgctagggaaacagggatggaaatt 11500962  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14504140 - 14504186
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatcttccagct 47  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  14504140 tctgttttgcaggctattccttcttatgtgatgagtatctttcagct 14504186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 13813287 - 13813139
Alignment:
Q  91 ttttggtggggtcacggtcgtagtacagctcgaggaataaattggttgagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaag 190  Q
    ||||||||||| || ||||| | ||||  | |||| || || |||||||||||||| || || || ||||||||||| | ||| || ||||| || ||||    
T  13813287 ttttggtgggggcatggtcgaactacacatagaggtattaactggttgagttgggaaaagttttccatgcataagtctcgtggtggaatgggttttaaag 13813188  T
Q  191 atctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    | ||| |||| |||||| | || ||||| || || ||||||||||||||    
T  13813187 aacttacggcctttaatcttgcgatgttgggaaaacaagggtggaaatt 13813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 14504311 - 14504379
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  14504311 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 14504379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 15991959 - 15991891
Alignment:
Q  172 ggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaattt 240  Q
    ||||||||||| ||||| || || || || |||||||||||||||||||| || || || |||||||||    
T  15991959 ggaggtatgggtttcaaggacctatctgcttttaatttggctatgttaggtaaacagggatggaaattt 15991891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15992130 - 15992090
Alignment:
Q  1 tctgtcttgcaggctattccatcttatgtgatgagtatctt 41  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  15992130 tctgttttgcaggctattccttcttatgcgatgagtatctt 15992090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 12748 - 12800
Alignment:
Q  187 aaagatctttcggcatttaatttggctatgttaggcaagcaagggtggaaatt 239  Q
    |||||| ||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  12748 aaagatatttcggcgtttaatttggcgatgttaggcaagaaagggtgaaaatt 12800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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