View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_2 (Length: 741)
Name: NF11656_low_2
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 334 - 725
Target Start/End: Original strand, 2572067 - 2572458
Alignment:
| Q |
334 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
433 |
Q |
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| T |
2572067 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
2572166 |
T |
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| Q |
434 |
gacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtac |
533 |
Q |
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| T |
2572167 |
gacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtac |
2572266 |
T |
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| Q |
534 |
acgtcaagttaccccccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaatggtagttaggcata |
633 |
Q |
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| T |
2572267 |
acgtcaagttaccccccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaatggtagttaggcata |
2572366 |
T |
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| Q |
634 |
gttaggcaactgccatattttttcctactataaataccagaaagtttcgttgaatatcatgcagacttagaaacttaatagaaccatcatga |
725 |
Q |
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| T |
2572367 |
gttaggcaactgccatattttttcctactataaataccagaaagtttagttgaatatcatgcagacttagaaacttaatagaaccatcatga |
2572458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 2571781 - 2572069
Alignment:
| Q |
19 |
catatacattgacattgtaaatgtttttcaaactgccggttgatcaaaactattggatcgcaatggaaatttggctttggctggctttagctatgtattg |
118 |
Q |
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| T |
2571781 |
catatacattgacattgtaaatatttttcaaactgctggttgatcaaaactattggatcgcaatagaaatttggctttggctggctttagctatgtattg |
2571880 |
T |
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| Q |
119 |
tttacgtaaaaggtcatacaagtgtgaattgtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatg |
218 |
Q |
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| T |
2571881 |
tttacgtaaaaggtcatacaagtgtgaattgtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatg |
2571980 |
T |
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| Q |
219 |
gagaaaacgacaaatacttgtataaaaaatataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
307 |
Q |
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| T |
2571981 |
gagaaaacgacaaatacttgtataaaaaatataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
2572069 |
T |
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