View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_27 (Length: 238)
Name: NF11656_low_27
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34594085 - 34593861
Alignment:
| Q |
1 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594085 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttg |
34593986 |
T |
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| Q |
101 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593985 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattctt |
34593886 |
T |
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| Q |
201 |
tgggaagttttgatagaatttcttg |
225 |
Q |
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| T |
34593885 |
tgggaagttttgatagaatttcttg |
34593861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34622094 - 34621870
Alignment:
| Q |
1 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34622094 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaagagattttctgcaaccaaatttg |
34621995 |
T |
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| Q |
101 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattctt |
200 |
Q |
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| T |
34621994 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcactggaatgagaaaattcaggggattctt |
34621895 |
T |
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| Q |
201 |
tgggaagttttgatagaatttcttg |
225 |
Q |
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| T |
34621894 |
tgggaagttctgatagaatttcttg |
34621870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34738332 - 34738108
Alignment:
| Q |
1 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34738332 |
aacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaagagattttctgcaaccaaatttg |
34738233 |
T |
|
| Q |
101 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34738232 |
attgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcactggaatgagaaaattcaggggattctt |
34738133 |
T |
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| Q |
201 |
tgggaagttttgatagaatttcttg |
225 |
Q |
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||||||||| ||||||||||||||| |
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| T |
34738132 |
tgggaagttctgatagaatttcttg |
34738108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34749533 - 34749307
Alignment:
| Q |
1 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34749533 |
aacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaagagattttctgcaaccaaatttg |
34749434 |
T |
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| Q |
101 |
attgcagaatagacccatatcacatcaaaa-ggtgggt-caactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattc |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34749433 |
attgcagaatagacccatatcacatcaaaagggtgggtccaacttgggtttgcatcagttcatgtaatgcatcactggaatgagaaaattcaggggattc |
34749334 |
T |
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| Q |
199 |
tttgggaagttttgatagaatttcttg |
225 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
34749333 |
tttgggaagttctgatagaatttcttg |
34749307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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