View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11656_low_3 (Length: 643)

Name: NF11656_low_3
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11656_low_3
NF11656_low_3
[»] chr8 (12 HSPs)
chr8 (12-408)||(1845514-1845910)
chr8 (479-625)||(1845383-1845517)
chr8 (404-480)||(15196499-15196575)
chr8 (405-480)||(38125584-38125659)
chr8 (404-480)||(38125584-38125660)
chr8 (403-480)||(1673900-1673977)
chr8 (454-483)||(2303313-2303342)
chr8 (454-483)||(2327907-2327936)
chr8 (402-475)||(4410793-4410866)
chr8 (445-482)||(36430422-36430459)
chr8 (448-480)||(4410796-4410828)
chr8 (445-473)||(24802595-24802623)
[»] chr2 (10 HSPs)
chr2 (19-408)||(29818467-29818856)
chr2 (479-625)||(29818853-29818987)
chr2 (404-480)||(12457018-12457094)
chr2 (412-481)||(9154142-9154211)
chr2 (445-480)||(12890265-12890300)
chr2 (404-479)||(16152538-16152613)
chr2 (445-480)||(19477214-19477249)
chr2 (451-480)||(247878-247907)
chr2 (451-480)||(34042053-34042082)
chr2 (447-480)||(39028804-39028837)
[»] chr4 (5 HSPs)
chr4 (405-480)||(32564829-32564904)
chr4 (403-480)||(7209058-7209135)
chr4 (404-481)||(32564828-32564905)
chr4 (451-480)||(20116669-20116698)
chr4 (445-481)||(50438171-50438207)
[»] chr3 (5 HSPs)
chr3 (404-481)||(42380550-42380627)
chr3 (404-481)||(42409264-42409341)
chr3 (451-480)||(11345537-11345566)
chr3 (451-480)||(30476242-30476271)
chr3 (451-480)||(31530988-31531017)
[»] chr7 (4 HSPs)
chr7 (412-480)||(31448371-31448439)
chr7 (451-484)||(2276433-2276466)
chr7 (408-480)||(10248806-10248878)
chr7 (405-480)||(28885482-28885557)
[»] chr1 (8 HSPs)
chr1 (451-484)||(5084942-5084975)
chr1 (445-480)||(6380151-6380186)
chr1 (445-480)||(31922881-31922916)
chr1 (445-480)||(46836417-46836452)
chr1 (451-480)||(32716009-32716038)
chr1 (452-488)||(59682-59718)
chr1 (444-480)||(42966386-42966422)
chr1 (452-480)||(51390651-51390679)
[»] chr5 (2 HSPs)
chr5 (445-480)||(30264590-30264625)
chr5 (404-480)||(28601930-28602006)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 1845910 - 1845514
Alignment:
Q  12 agaagcaaaggccgggttagaatcagaaatgaagaagctaagggtgcagacagaacaatggagaaaagcagcagatgctgcagctgcagtgcttgcagga 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845910 agaagaaaaggccgggttagaatcagaaatgaagaagctaagggtgcagacagaacaatggagaaaagcagcagatgctgcagctgcagtgcttgcagga 1845811  T
Q  112 ggttttgatatgagtgctgctgctagggttcctgaaaggtgtggttcaatggataagcactttggtggtggaacatttgagacacctggtggaaggtatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845810 ggttttgatatgagtgctgctgctagggttcctgaaaggtgtggttcaatggataagcactttggtggtggaacatttgagacacctggtggaaggtatc 1845711  T
Q  212 atggatatgtaggttctcctggtatggttgatgatctggatgatggttttggtagtggaaaaaagaagggttcttctggtattagaatgtttggtgattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1845710 atggatatgtaggttctcctggtatggttgatgatctggatgatggttttggtagtggaaaaaagaagggttcttctggtattagaatgtttggtgattt 1845611  T
Q  312 atggaagaagaaaggccaaaagtgatttctgcacctgcttgaattgacggtgagtttggcacaatcacggtcacgtgattctgtcaaatgtaatact 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||    
T  1845610 atggaagaagaaaggccaaaagtgatttctgcacctgcttgaattgacagagagtttggcaaaatcacggtcacgtgattctgtcaaaagtaatact 1845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 479 - 625
Target Start/End: Complemental strand, 1845517 - 1845383
Alignment:
Q  479 tactttggagcctcaacgaattcacgtcaccgtaattttgtcgaactcgctgtaattcccaatgagtagtattttaactatggccatgtttaggtggtag 578  Q
    |||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||| ||||||           |||||||||||||||||||||||    
T  1845517 tactttggagcctcgataaattcacgtcaccgtaattttgtcaaactcgctgtaattcc-aatgag-----------ctatggccatgtttaggtggtag 1845430  T
Q  579 cagaagctgtgaaaaaacagttgcttattgttgtgcatgcttctttt 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1845429 cagaagctgtgaaaaaacagttgcttattgttgtgcatgcttctttt 1845383  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 15196499 - 15196575
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||||||||| ||||||||||| | |||   |   ||||||||||||||||||||||||||||||||||||    
T  15196499 atactccctccgtccctatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacggagggagta 15196575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 38125584 - 38125659
Alignment:
Q  405 tactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||  ||||||||||||| |||   |   ||||||||||||||| ||||||||||||||||||||    
T  38125584 tactccctccgtccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagta 38125659  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 38125660 - 38125584
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccc-tttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||||||||| |||||||||||||| |||||  |||  |||| |||||||| ||||| ||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaa-ggtgcttacatatatggacggagggagta 38125584  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 1673977 - 1673900
Alignment:
Q  403 aatactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||  |||||  |||||||||||| |||   |  |||||||||||||||||||| | ||||||||||||||    
T  1673977 aatactccctttgtccctgtatgtaagcaccttttgcatctgataaaagggtgcttagatacaaggacggagggagta 1673900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Original strand, 2303313 - 2303342
Alignment:
Q  454 tgcttagatatagggacggagggagtactt 483  Q
    ||||||||||||||||||||||||||||||    
T  2303313 tgcttagatatagggacggagggagtactt 2303342  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Original strand, 2327907 - 2327936
Alignment:
Q  454 tgcttagatatagggacggagggagtactt 483  Q
    ||||||||||||||||||||||||||||||    
T  2327907 tgcttagatatagggacggagggagtactt 2327936  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 4410793 - 4410866
Alignment:
Q  402 taatactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagg 475  Q
    |||||||||||||||||| |||| |||||||||||| | |   ||||||| ||||||| |||||| ||| ||||    
T  4410793 taatactccctccgtccctatatataagcaccctttgtctctaataaaagagtgcttatatatagcgacagagg 4410866  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 36430459 - 36430422
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagtact 482  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  36430459 ataaaagggtgcttaaatatagggacggaggaagtact 36430422  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 480
Target Start/End: Complemental strand, 4410828 - 4410796
Alignment:
Q  448 aaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||||| ||||||||||||||||||||    
T  4410828 aaagggtgcttatatatagggacggagggagta 4410796  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 473
Target Start/End: Original strand, 24802595 - 24802623
Alignment:
Q  445 ataaaagggtgcttagatatagggacgga 473  Q
    |||||||||||||||||||||||||||||    
T  24802595 ataaaagggtgcttagatatagggacgga 24802623  T

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Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 29818467 - 29818856
Alignment:
Q  19 aaggccgggttagaatcagaaatgaagaagctaagggtgcagacagaacaatggagaaaagcagcagatgctgcagctgcagtgcttgcaggaggttttg 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29818467 aaggcagggttagaatcagaaatgaagaagctaagggtgcagacagaacaatggagaaaagcagcagatgctgcagctgcagtgcttgcaggaggttttg 29818566  T
Q  119 atatgagtgctgctgctagggttcctgaaaggtgtggttcaatggataagcactttggtggtggaacatttgagacacctggtggaaggtatcatggata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29818567 atatgagtgctgctgctagggttcctgaaaggtgtggttcaatggataagcactttgttggtggaacatttgagacacctggtggaaggtatcatggata 29818666  T
Q  219 tgtaggttctcctggtatggttgatgatctggatgatggttttggtagtggaaaaaagaagggttcttctggtattagaatgtttggtgatttatggaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29818667 tgtaggttctcctggtatggttgatgatctggatgatggttttggtagtggaaaaaagaagggttcttctggtattagaatgtttggtgatttatggaag 29818766  T
Q  319 aagaaaggccaaaagtgatttctgcacctgcttgaattgacggtgagtttggcacaatcacggtcacgtgattctgtcaaatgtaatact 408  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||    
T  29818767 aagaaaggtcaaaagtgatttctgcacctgcttgaattgacagcgagtttggcagaatcacggtcacgtgattctgtcaaaagtaatact 29818856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 479 - 625
Target Start/End: Original strand, 29818853 - 29818987
Alignment:
Q  479 tactttggagcctcaacgaattcacgtcaccgtaattttgtcgaactcgctgtaattcccaatgagtagtattttaactatggccatgtttaggtggtag 578  Q
    |||||||||||||| |  |||||||||||||||||||||||| |||||||||||||||| ||||||           |||||||||||||||||||||||    
T  29818853 tactttggagcctcgataaattcacgtcaccgtaattttgtcaaactcgctgtaattcc-aatgag-----------ctatggccatgtttaggtggtag 29818940  T
Q  579 cagaagctgtgaaaaaacagttgcttattgttgtgcatgcttctttt 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29818941 cagaagctgtgaaaaaacagttgcttattgttgtgcatgcttctttt 29818987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 12457094 - 12457018
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||| ||||| |||||||||||||||||   |   ||||||||||||||||||||||||||||||||||||    
T  12457094 atactccctctgtccctatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacggagggagta 12457018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 9154142 - 9154211
Alignment:
Q  412 tccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagtac 481  Q
    |||||||| |||||||| ||||||||   |   |||||||||||||||||||||||||||||||||||||    
T  9154142 tccgtccctatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacggagggagtac 9154211  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Complemental strand, 12890300 - 12890265
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||| |||||||||||||||||||||||||||    
T  12890300 ataaaaggatgcttagatatagggacggagggagta 12890265  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 479
Target Start/End: Complemental strand, 16152613 - 16152538
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagt 479  Q
    |||||||||||||||  |||| |||||||||||| | |   ||||||||||||||| ||| ||||||| |||||||    
T  16152613 atactccctccgtccatatatataagcaccctttgtctctaataaaagggtgcttatatagagggacgaagggagt 16152538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 19477214 - 19477249
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||| ||||||    
T  19477214 ataaaagggtgcttagatatagggacggatggagta 19477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 247878 - 247907
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  247878 gggtgcttagatatagggacggagggagta 247907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 34042082 - 34042053
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  34042082 gggtgcttagatatagggacggagggagta 34042053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 39028804 - 39028837
Alignment:
Q  447 aaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||||| |||||||||||||||||||||    
T  39028804 aaaagggtgctttgatatagggacggagggagta 39028837  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 32564829 - 32564904
Alignment:
Q  405 tactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||| |||||||||||| ||||   |   ||||||||||||||| ||||||||||||||||||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacggagggagta 32564904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 7209135 - 7209058
Alignment:
Q  403 aatactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||| |||||||||||| |||| | |   ||||||  |||||||||||||||||| |||||||||    
T  7209135 aatactccctccgtccctatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggactgagggagta 7209058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 32564905 - 32564828
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccc-tttatgtgagataaaagggtgcttagatatagggacggagggagtac 481  Q
    |||||||||||||||| |||||||||||||| |||||  |||   |||| ||||||| |||||||||||||||||||||    
T  32564905 atactccctccgtccctatatgtaagcacccttttattagag-gcaaagagtgcttacatatagggacggagggagtac 32564828  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 20116669 - 20116698
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  20116669 gggtgcttagatatagggacggagggagta 20116698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 50438207 - 50438171
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagtac 481  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  50438207 ataaaagggtgattacatatagggacggagggagtac 50438171  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 42380550 - 42380627
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagtac 481  Q
    ||||||| |||||||| |||||||||||||||||   |   ||||||||||  |||||||||||||||||||||||||    
T  42380550 atactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagtac 42380627  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 42409264 - 42409341
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagtac 481  Q
    ||||||| |||||||| |||||||||||||||||   |   ||||||||||  |||||||||||||||||||||||||    
T  42409264 atactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagtac 42409341  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 11345537 - 11345566
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  11345537 gggtgcttagatatagggacggagggagta 11345566  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 30476242 - 30476271
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  30476242 gggtgcttagatatagggacggagggagta 30476271  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 31531017 - 31530988
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  31531017 gggtgcttagatatagggacggagggagta 31530988  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 31448371 - 31448439
Alignment:
Q  412 tccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||| |||||||||||||||||   |   |||||||||||||||||||||||||||||| |||||    
T  31448371 tccgtccctatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacggagagagta 31448439  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Complemental strand, 2276466 - 2276433
Alignment:
Q  451 gggtgcttagatatagggacggagggagtacttt 484  Q
    ||||||||| ||||||||||||||||||||||||    
T  2276466 gggtgcttatatatagggacggagggagtacttt 2276433  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 480
Target Start/End: Original strand, 10248806 - 10248878
Alignment:
Q  408 tccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||  ||| ||||||| |||||  |   |||||||||||||||||||||| ||||||| |||||    
T  10248806 tccctccgtccctctatataagcactctttacatctaataaaagggtgcttagatatagagacggagagagta 10248878  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 28885557 - 28885482
Alignment:
Q  405 tactccctccgtccccatatgtaagcaccctttatgtgagat-aaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||  ||||||||||||||||| | | |||  |||| |||||||| |||||||||||||| |||||    
T  28885557 tactccctccgtccttatatgtaagcacccttt-tattagaggaaaatggtgcttacatatagggacggagagagta 28885482  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 484
Target Start/End: Complemental strand, 5084975 - 5084942
Alignment:
Q  451 gggtgcttagatatagggacggagggagtacttt 484  Q
    ||||||||||||||||||||||||||||||||||    
T  5084975 gggtgcttagatatagggacggagggagtacttt 5084942  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Complemental strand, 6380186 - 6380151
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6380186 ataaaagggtgcttagatatagggatggagggagta 6380151  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 31922881 - 31922916
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||||||||||||||||||||||| |||||    
T  31922881 ataaaagggtgcttagatatagggacggagagagta 31922916  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 46836417 - 46836452
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||| ||||||    
T  46836417 ataaaagggtgcttagatatagggacggaaggagta 46836452  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 32716009 - 32716038
Alignment:
Q  451 gggtgcttagatatagggacggagggagta 480  Q
    ||||||||||||||||||||||||||||||    
T  32716009 gggtgcttagatatagggacggagggagta 32716038  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 59682 - 59718
Alignment:
Q  452 ggtgcttagatatagggacggagggagtactttggag 488  Q
    |||||||| |||||||||||||||||||| |||||||    
T  59682 ggtgcttatatatagggacggagggagtattttggag 59718  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 42966386 - 42966422
Alignment:
Q  444 gataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||| |||||||||||||||||| |||||||||    
T  42966386 gataaaagagtgcttagatatagggacagagggagta 42966422  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 51390651 - 51390679
Alignment:
Q  452 ggtgcttagatatagggacggagggagta 480  Q
    |||||||||||||||||||||||||||||    
T  51390651 ggtgcttagatatagggacggagggagta 51390679  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 30264590 - 30264625
Alignment:
Q  445 ataaaagggtgcttagatatagggacggagggagta 480  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30264590 ataaaagagtgcttagatatagggacggagggagta 30264625  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 28602006 - 28601930
Alignment:
Q  404 atactccctccgtccccatatgtaagcaccctttatgtgagataaaagggtgcttagatatagggacggagggagta 480  Q
    |||||||||| ||||  |||| |||||||| ||||| |   ||||||||||||||||||||| | ||||||| ||||    
T  28602006 atactccctctgtcctgatatataagcaccatttatctctaataaaagggtgcttagatataagaacggaggaagta 28601930  T

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