View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11656_low_31 (Length: 218)

Name: NF11656_low_31
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11656_low_31
NF11656_low_31
[»] chr4 (4 HSPs)
chr4 (11-172)||(14174964-14175126)
chr4 (11-172)||(28610752-28610913)
chr4 (173-218)||(28608156-28608201)
chr4 (173-218)||(14177673-14177718)
[»] chr8 (2 HSPs)
chr8 (11-172)||(12931694-12931856)
chr8 (173-218)||(12934403-12934448)
[»] chr5 (1 HSPs)
chr5 (20-159)||(38996370-38996510)
[»] chr3 (2 HSPs)
chr3 (11-88)||(24875544-24875621)
chr3 (106-172)||(24874632-24874698)
[»] chr7 (2 HSPs)
chr7 (173-218)||(15300189-15300234)
chr7 (173-217)||(33415690-33415734)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 14174964 - 14175126
Alignment:
Q  11 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgg-ggagaa 109  Q
    ||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||    
T  14174964 cagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcggcgaagaa 14175063  T
Q  110 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 172  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14175064 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaa 14175126  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 28610913 - 28610752
Alignment:
Q  11 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgggga-gaa 109  Q
    ||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28610913 cagaggcagaagcaagagcggggggagatccaataaatccaa-gacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcggcgaagaa 28610815  T
Q  110 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 172  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28610814 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaa 28610752  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 28608201 - 28608156
Alignment:
Q  173 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  28608201 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 28608156  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 14177673 - 14177718
Alignment:
Q  173 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 218  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14177673 gatgtatgcaatggtttgcaccaggccagatattgctcatgtagtt 14177718  T

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Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 12931694 - 12931856
Alignment:
Q  11 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgc-ggggagaa 109  Q
    ||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||    
T  12931694 cagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcaacgaagaa 12931793  T
Q  110 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 172  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  12931794 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaagaccggaggaatcaa 12931856  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 12934403 - 12934448
Alignment:
Q  173 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  12934403 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 12934448  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 38996510 - 38996370
Alignment:
Q  20 aagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgg-ggagaaggtcatatg 118  Q
    |||||||||||||| | |||||||||||||||| ||   |||||| ||||||| |  |||||  |||||||||| ||||||||| ||||||| ||| ||     
T  38996510 aagtaagagcagagagtgatccaataaatccaatgatttatcacagtctcaactttaaagaatgttcaagtgttatcactgcggcggagaagatcacatc 38996411  T
Q  119 aaaagaaattgcaaatcttggaagaacaaagaaaagaagga 159  Q
     |||||||||| |||||||||||||| ||| |||| |||||    
T  38996410 caaagaaattgtaaatcttggaagaaaaaataaaataagga 38996370  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 24875621 - 24875544
Alignment:
Q  11 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaa 88  Q
    ||||| ||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  24875621 cagaggcagaagtaagagctgatggtgatccaataaatccaaagacagattacagtctcaacctcgaaaaaagttcaa 24875544  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 24874698 - 24874632
Alignment:
Q  106 agaaggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 172  Q
    ||||||||| || ||||||||||| |||   ||||||| ||||||||||||||||  ||||||||||    
T  24874698 agaaggtcacataaaaagaaattgaaaacaatggaagagcaaagaaaagaaggataagaggaatcaa 24874632  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 15300189 - 15300234
Alignment:
Q  173 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15300189 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 15300234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 33415734 - 33415690
Alignment:
Q  173 gatgtatgcaatggtttgcactaggccagatattgctcatgcagt 217  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  33415734 gatgtatgcaatggtttgcactagaccagatatagctcatgcagt 33415690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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