View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_8 (Length: 470)
Name: NF11656_low_8
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 30725327 - 30724891
Alignment:
| Q |
16 |
gtaaaataacatgatttttcttatagtaatatatcttaattgccgagtacatagcacaaaaacataaacacaaacttggtactaatttactaacttaact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725327 |
gtaaaataacatgatttttcttatagtaatatatcttaattgccgagtacatagcacaaaaacataaacacaaacttggtactaatttactaacttaact |
30725228 |
T |
|
| Q |
116 |
tatctttggcctaaagatatagtcgtcattagcagacaattacttgcaggtacaaaattacaccaaaacatcacataatgtgaacaaaagaaactatgta |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725227 |
tatctttggcctatagatatagtcgtcattagcagacaattacttgcaggtacaaaattacaccaaaacatcacataatgtgaacaaaagaaactatgta |
30725128 |
T |
|
| Q |
216 |
gacctgaaccacttgctattgtagacatgtacttggttcttcaatctaacgataataatcatatgagtacaaattatcatcaagtatggcaaaagagact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725127 |
gacctgaaccacttgctattgtagacatgtacttggttcttcaatctaacgataataatcatatgagtacaaattatcatcaagtatggcaaaagagact |
30725028 |
T |
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| Q |
316 |
cctttcttgaacgagtacagcttctccttaaattcttcaatcacagcggatttactcctctcatcataaaaggagaaactcatcctctcaagcaccatac |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725027 |
cctttcttgaatgagtacagcttctccttaaattcttcaatcacagtggatttactcctctcatcataaaaggagaaactcatcctctcaagcaccatac |
30724928 |
T |
|
| Q |
416 |
cattttctagaaaaatattagccaaaaacaacgcatc |
452 |
Q |
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| T |
30724927 |
cattttctagaaaaatattagccaaaaacaacgcatc |
30724891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 30710918 - 30710781
Alignment:
| Q |
295 |
tcaagtatggcaaaagagactcctttcttgaacgagtacagcttctccttaaattcttcaatcacagcggatttactcctctcatcataaaaggagaaac |
394 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||| |
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| T |
30710918 |
tcaagtatggcaaaagagactcctttcttgaatgagtacagcttctccttaaattcttcaatcacagtggattttc---------cataaagggagaaac |
30710828 |
T |
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| Q |
395 |
tcatcctctcaagcaccataccattttctagaaaaatattagccaaa |
441 |
Q |
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| T |
30710827 |
tcgtcctctcaagcaccacaccattttccataaaaaatttagccaaa |
30710781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 30711162 - 30711044
Alignment:
| Q |
71 |
acaaaaacataaacacaaacttggtactaatttactaacttaacttatc-tttggcctaaagatatagtcgtcattagcagacaattacttgcaggtaca |
169 |
Q |
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||||||| ||| ||||||||||||||||||||| |||||| |||||||| ||| ||| ||||||||||| ||||| ||| ||||| |||||||||| || |
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| T |
30711162 |
acaaaaatatagacacaaacttggtactaattttctaactcaacttatcttttagccaaaagatatagtgatcattggcacacaatgacttgcaggtgca |
30711063 |
T |
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| Q |
170 |
aaattacaccaaaacatca |
188 |
Q |
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||||||||||| ||||||| |
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| T |
30711062 |
aaattacaccataacatca |
30711044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 30717364 - 30717303
Alignment:
| Q |
295 |
tcaagtatggcaaaagagactcctttcttgaacgagtacagcttctccttaaattcttcaat |
356 |
Q |
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||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||| |
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| T |
30717364 |
tcaagtatggcaaaagagactcctttcttaaatgagtacaacttctccttgaattcttcaat |
30717303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 30717268 - 30717234
Alignment:
| Q |
388 |
gagaaactcatcctctcaagcaccataccattttc |
422 |
Q |
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| T |
30717268 |
gagaaactcatcctctcaagcactataccattttc |
30717234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 11358120 - 11358178
Alignment:
| Q |
295 |
tcaagtatggcaaaagagactcctttcttgaacgagtacagcttctccttaaattcttc |
353 |
Q |
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||||||||| || |||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
11358120 |
tcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttc |
11358178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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