View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11656_low_9 (Length: 469)
Name: NF11656_low_9
Description: NF11656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11656_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 10186796 - 10186579
Alignment:
| Q |
16 |
acaaacaaaagctttataccttctttgcagcagcttcagcttctttccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgca |
115 |
Q |
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| T |
10186796 |
acaaaccaaagctttataccttctttgcagcagcttcagcttctttccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgca |
10186697 |
T |
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| Q |
116 |
atcgccaatcaaccatctcagtcactccttttaagtgtcgagctagccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagctta |
215 |
Q |
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| T |
10186696 |
atcgccaatcaaccatctcagtcgctccttttaagtgtcgagctagccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagctta |
10186597 |
T |
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| Q |
216 |
atgtgacataaaacaaga |
233 |
Q |
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|||||||||||||||||| |
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| T |
10186596 |
atgtgacataaaacaaga |
10186579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 300 - 458
Target Start/End: Complemental strand, 10186512 - 10186355
Alignment:
| Q |
300 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
399 |
Q |
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| T |
10186512 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagatgataaaatatataagtgggaggaacg-aaaagctaggaaa |
10186414 |
T |
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| Q |
400 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
458 |
Q |
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| T |
10186413 |
taatcaacagggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
10186355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 28931933 - 28931746
Alignment:
| Q |
29 |
ttataccttctttgcagcagcttcagcttctttccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaac |
128 |
Q |
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| T |
28931933 |
ttataccttctttgccgcatcttcagcttctttccacatgccatcaaattgtctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaac |
28931834 |
T |
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| Q |
129 |
catctcagtcactccttttaagtgtcgagctagccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacat |
224 |
Q |
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| T |
28931833 |
catctcaggcac--------agtttcgagctagccttgacatacagtggtatgtctcagcctattaatgaatatcttcaaaagttaaatgttacat |
28931746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 458
Target Start/End: Complemental strand, 28931650 - 28931501
Alignment:
| Q |
308 |
tggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaataatcaac |
407 |
Q |
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|||||||| ||||| ||||||| ||||| |||| |||||| ||| ||||||| ||||||| |||||||| |||||| ||||| ||| |||| || |||| |
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| T |
28931650 |
tggaattctgggttcctacaacgaccaatgacaagaatcaaacatagcagacaataaaatctataagtgagaggaaagaaaac-ctaagaaaaaaacaac |
28931552 |
T |
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| Q |
408 |
agggcaggcttttttatgtccaagcatgaaattttagatctattcgttcat |
458 |
Q |
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| T |
28931551 |
agagcaagctttttcatgtctgagcatgaaaggttagatctattccttcat |
28931501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 35122217 - 35122411
Alignment:
| Q |
30 |
tataccttctttgcagcagcttcagcttctttccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaacc |
129 |
Q |
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| T |
35122217 |
tataccttctttgcagcagcttcagcttctttccacacgccatcaaattgcttgtacagctgctcagttgtctgctttgttctgcattcgccaatcaacc |
35122316 |
T |
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| Q |
130 |
atctcagtcactccttttaagtgtcgagctagccttgacatacagtggtatgtctcagcctattaatggataacttcaaaagcttaatgtgacat |
224 |
Q |
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| T |
35122317 |
atctcaggcactccttttaagtgttgagctagccttgacatacaatggtatgtctcagcctatcaatgaataacttcaaaagtttaatgttacat |
35122411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 35122499 - 35122606
Alignment:
| Q |
300 |
cagacttctggaattccgggtttctacaaccaccaacgacatgaatcagacagagcagacgataaaatatataagtgggaggaacgaaaaagctaggaaa |
399 |
Q |
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||||||| |||||||| |||||||||||||||||||| ||| |||| | ||||||||| ||| | ||| ||| ||||||||||| | ||||||||||| | |
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| T |
35122499 |
cagacttttggaattctgggtttctacaaccaccaacaacaagaattaaacagagcaggcgacataatctatgagtgggaggaaag-aaaagctaggaga |
35122597 |
T |
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| Q |
400 |
taatcaaca |
408 |
Q |
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| T |
35122598 |
taatcaaca |
35122606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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