View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11657_high_3 (Length: 382)
Name: NF11657_high_3
Description: NF11657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11657_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 4761681 - 4761328
Alignment:
| Q |
1 |
aaatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgtt |
100 |
Q |
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| T |
4761681 |
aaatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgtt |
4761582 |
T |
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| Q |
101 |
gtcttgtcttgtggtaacgatttcaattgcgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaa |
200 |
Q |
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| T |
4761581 |
gtcttgtcttgtggtaacgatttcaattgcgtgtatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaa |
4761484 |
T |
|
| Q |
201 |
ttattatggtttaccaacaaaccccgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaa |
300 |
Q |
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| T |
4761483 |
ttattatggtttaccaataaaccctgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaa |
4761384 |
T |
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| Q |
301 |
atctatgcatggtaagatataataagaaaaatggttctggttccacttagtcatga |
356 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4761383 |
atctatgcatggtaagatataataagaaaaatgattctggttccacttagtcatga |
4761328 |
T |
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