View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_high_1 (Length: 846)
Name: NF11658_high_1
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 737; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 82 - 830
Target Start/End: Complemental strand, 34860584 - 34859836
Alignment:
| Q |
82 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
181 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
|
| Q |
182 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatgatggataatttctct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctct |
34860385 |
T |
|
| Q |
282 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860384 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
34860285 |
T |
|
| Q |
382 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860284 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
34860185 |
T |
|
| Q |
482 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860184 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
34860085 |
T |
|
| Q |
582 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
681 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860084 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
34859985 |
T |
|
| Q |
682 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaag |
781 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859984 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaag |
34859885 |
T |
|
| Q |
782 |
ccacttcaataacacaaatgttgaagggtttttgtgatactatctatct |
830 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34859884 |
ccacttcaataacacaaatgttgaagggtttttgtgatactatctatct |
34859836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34860638 - 34860600
Alignment:
| Q |
20 |
gcagggaaatacatgatgaagcttatatgtgtaagttga |
58 |
Q |
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| T |
34860638 |
gcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 733 - 824
Target Start/End: Complemental strand, 23133073 - 23132979
Alignment:
| Q |
733 |
tgtgtttcttctttaatttac---aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactat |
824 |
Q |
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|||||||||| |||| ||||| |||||| || ||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||| |
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| T |
23133073 |
tgtgtttcttgtttattttaccgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactat |
23132979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
82 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
168 |
Q |
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||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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