View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11658_high_10 (Length: 451)
Name: NF11658_high_10
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 39264873 - 39264424
Alignment:
| Q |
1 |
gaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39264873 |
gaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaaca |
39264774 |
T |
|
| Q |
101 |
agccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39264773 |
agccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaa |
39264674 |
T |
|
| Q |
201 |
gaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaatttccctttcttgtagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39264673 |
gaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaatttccctttcttgtagaaa |
39264574 |
T |
|
| Q |
301 |
aattggtagagcttctatgctgcttgataacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctcttagatcatctttgaggtta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39264573 |
aattggtagagcttctatgctgcttgataacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctcttagatcatctttgaggtta |
39264474 |
T |
|
| Q |
401 |
caaaagatggatcctaaaactagtcctgaaatcagcatctgaattgtcct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39264473 |
caaaagatggatcctaaaactagtcctgaaatcagcatctgaattgtcct |
39264424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 29 - 451
Target Start/End: Complemental strand, 44068563 - 44068141
Alignment:
| Q |
29 |
gaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaacaagccatatcagtaacagaaagtgcaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||| || || || ||||| | ||| |||||||| || |||| ||||||||||| |
|
|
| T |
44068563 |
gaatttccaacaatgaaattaggcaccagagcactgaaacagaccacaaccgagtttgcggtatacaaaaccagccatattagcaacaaaaagtgcaaaa |
44068464 |
T |
|
| Q |
129 |
aagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaagaaatggcaagtaaactaagccatttgc |
228 |
Q |
| |
|
| || ||||| ||| ||||||||| | || |||||| | || |||| ||| ||||||||||| || || ||||||||||||||||||| |||||| || |
|
|
| T |
44068463 |
acgctgtgaaattttggttgagaccgataatccagtaaagcggcactgcgaataaaatggctagtatgagtagaaatggcaagtaaactaggccattggc |
44068364 |
T |
|
| Q |
229 |
aatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaatttccctttcttgtagaaaaattggtagagcttctatgctgcttgat |
328 |
Q |
| |
|
||||||||||||||| || | ||||||||||| || || |||||||| ||||| |||||||||||||||||||| ||||||||||| ||| || ||| |
|
|
| T |
44068363 |
aatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatctccctttcttgtagaaaaatcggtagagcttcaatggcactcgat |
44068264 |
T |
|
| Q |
329 |
aacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctcttagatcatctttgaggttacaaaagatggatcctaaaactagtcctg |
428 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||| || || ||| ||| |||||||||| |||| |||||||||||||||||| || |||| |
|
|
| T |
44068263 |
aacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccacgagaccatctttgagattaccaaagatggatcctaaaaccagccctg |
44068164 |
T |
|
| Q |
429 |
aaatcagcatctgaattgtccta |
451 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
44068163 |
aaatcagcatctgaatagtccta |
44068141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University