View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_high_11 (Length: 448)
Name: NF11658_high_11
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_11 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 35279604 - 35280034
Alignment:
| Q |
18 |
atgagcaaggtcacttgatgacaacgtgcttaactgctcatcctatctttaatatggagtgacgttgtaggtccttatataggtatgaagaaattctaat |
117 |
Q |
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| T |
35279604 |
atgagcaaggtcacttgttgacaacgtgcttaactgctcatcctatctttaatatggagtgacgttgtaggtccttaaataggtatgaagaaattctaat |
35279703 |
T |
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| Q |
118 |
cttgattataacacttatgatttttgtgtgagcagtaaacaattgagaaagaagaataaacaatgcaacatttgattaatccaacataaaactaacatta |
217 |
Q |
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| T |
35279704 |
cttgattataacacttatgatttttgtttgagcagtacacaattgagaaagaagaaaaaacaatgcaacatttgattaatccaacataaaactagcatta |
35279803 |
T |
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| Q |
218 |
tccattcattgatttatgtaagacaaacaatatataaagatctagtcagcatttatgactttgaccctctacttaatcaattatccaaaatctccaacac |
317 |
Q |
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| T |
35279804 |
tccattcattgatttatgtaagacaaacaatatataaagatctagtcagcctttatgactttgaccctctacttaatcaattatccaaattctccaacac |
35279903 |
T |
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| Q |
318 |
aatatttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggact |
417 |
Q |
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| T |
35279904 |
aatatttattcaattgctaatatgccctccaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggact |
35280003 |
T |
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| Q |
418 |
aattctgctcatcttcaccatagcaaaagca |
448 |
Q |
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| T |
35280004 |
aattctgctcatcttcaccatagcaaaagca |
35280034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 35289287 - 35289373
Alignment:
| Q |
356 |
atcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagca |
442 |
Q |
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| T |
35289287 |
atcaattagttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagca |
35289373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 322 - 443
Target Start/End: Original strand, 35307058 - 35307175
Alignment:
| Q |
322 |
tttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaatt |
421 |
Q |
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| T |
35307058 |
tttatttaattgcttataagccctccaattcaagatcaatt----cacaagcctgcaattctttctaatctccccattagtcccagttagaggactaatt |
35307153 |
T |
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| Q |
422 |
ctgctcatcttcaccatagcaa |
443 |
Q |
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| T |
35307154 |
ttactcagtttcaccatagcaa |
35307175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 448
Target Start/End: Original strand, 35322059 - 35322181
Alignment:
| Q |
322 |
tttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaatt |
421 |
Q |
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| T |
35322059 |
tttattcaattgcttataagccctccaattcaagatcaatt----cacaagcctacaattctttctaatctccccattagtcccagttagaggattaatt |
35322154 |
T |
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| Q |
422 |
ctgctcatcttcaccatagcaaaagca |
448 |
Q |
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| T |
35322155 |
ttactcagtttcaccatagcaacagca |
35322181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 35289076 - 35289173
Alignment:
| Q |
156 |
acaattgagaaagaagaataaacaatgcaacatttgattaatccaacataaaactaacattatccattcattgatttatgtaagacaaacaatatata |
253 |
Q |
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| T |
35289076 |
acaattgagaaataagaaaaaacaatgcaacaacatttgaatccaacacaaaactagcattttccattcattgatttaagtaagacaaacaacatata |
35289173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 35275182 - 35275261
Alignment:
| Q |
363 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagca |
442 |
Q |
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| T |
35275182 |
aattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagca |
35275261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 35311438 - 35311517
Alignment:
| Q |
363 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagca |
442 |
Q |
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| T |
35311438 |
aattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttactcagtttcaccatagca |
35311517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 35275027 - 35275118
Alignment:
| Q |
254 |
aagatctagtcagcatttatgactttgaccctctacttaatcaat-tatccaaaatctccaacacaatatttattcaattgctaatatgccct |
345 |
Q |
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| T |
35275027 |
aagatctagtcaacctttatgacctagaccctgtaattaaacaatctctcaaaaatctcca-cacaatatttattaaattgctgatatgccct |
35275118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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