View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11658_high_12 (Length: 436)
Name: NF11658_high_12
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 2786326 - 2785917
Alignment:
| Q |
17 |
aaatcaaagccatctacaatgctggagctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786326 |
aaatcaaagccatctacaatgctggagctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgc |
2786227 |
T |
|
| Q |
117 |
cttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgtatctgtcgcaccagttacgggggcacccccatcttca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786226 |
cttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgtatctgtcgcaccagttacgggggcacccccatcttca |
2786127 |
T |
|
| Q |
217 |
ttgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagttgagccagtgcctgtaaaagttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2786126 |
ttgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtcagtgtgactcctgctactgtaaaagctgagccagtgcctgtaaaagttg |
2786027 |
T |
|
| Q |
317 |
agccattgccggtaaaagttgagcgtggcgtaaaaattgagcgtggcacggcattttctggaccatcagtaattactagttcgggatatcttactgcttc |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2786026 |
agccattgccggtaaaagttgagcgtgtcgtaaaaattgagcgtggcacgacatcttctggaccgccagtaattactagttcgggatatcttactgcttc |
2785927 |
T |
|
| Q |
417 |
tacacaggtt |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
2785926 |
tacacaggtt |
2785917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 22518232 - 22518378
Alignment:
| Q |
75 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgat |
174 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| ||||||||||| | ||||| | || ||||||||||||||| || ||| ||||| || |
|
|
| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtcgacctggaacta---acatgccttcaaatcaaagtcctgtaaaagtagac |
22518328 |
T |
|
| Q |
175 |
gatgtatctgtcgcaccagttacgggggcacccccatcttcattgccatc |
224 |
Q |
| |
|
| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22518329 |
gctgtatctgccacaccagttacgggggcacccccatcttcattgccatc |
22518378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 22519728 - 22519795
Alignment:
| Q |
226 |
gtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagt |
293 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
22519728 |
gtgaatggatctattccgaaccggcaaccaatacctgctgggaatgtgactcctgctactgtaaaagt |
22519795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 22520289 - 22520342
Alignment:
| Q |
373 |
tctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
426 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
22520289 |
tctggaccgtcagtaataactagttctggatctcttactgcttctgcacaggtt |
22520342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University