View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_high_17 (Length: 363)
Name: NF11658_high_17
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 24351758 - 24351966
Alignment:
| Q |
20 |
ggggattagtaaacttcttcttgaagatatgtcttctttagta-----ttctactggtgagtacaaaagtttgtgtttttcagcactcgctattactgat |
114 |
Q |
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| T |
24351758 |
ggggattagtaaacttgttcttgaagatatgtcttctttagtacatagttctactggtgagtacaaaagtttgtgtttttcagcactcgctattactgat |
24351857 |
T |
|
| Q |
115 |
tagcaatgttattaaactcaggactagtcgttgacttatttacttgatttgtcggtcactggtcgaactaacgagtctctagttgaactacatgaatcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24351858 |
tagcaatgttattaaactcaggactagtcgttgacttagttacttgatttgtcggtcactggtcgaactaacgagtctctagttgaactacatgaattag |
24351957 |
T |
|
| Q |
215 |
tatattatt |
223 |
Q |
| |
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||||||||| |
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| T |
24351958 |
tatattatt |
24351966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 9858138 - 9857933
Alignment:
| Q |
20 |
ggggattagtaaacttcttcttgaagatatgtcttctttagta-----ttctactggtgagtacaaaagtttgtgtttttc-agcactcgctattactga |
113 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| | |
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| T |
9858138 |
ggggattagtaaacgacttcttgaagacatgtcttctttaggccacagttctactggtgagtacaaaagtttgtgtttttttagcactcactattactaa |
9858039 |
T |
|
| Q |
114 |
ttagcaatgttattaaactcaggactagtcgttgacttatttacttgatttgtcggtcactggtcgaactaacgagtctctagttgaactacatgaatca |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||| || ||||| | ||||||||||||||||||| ||||||| |
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| T |
9858038 |
ttagcaatgttattaaactcaggaccagtcgttgacttagttacttgttttgttggtcactagttgaactgatgagtctctagttgaactacgtgaatca |
9857939 |
T |
|
| Q |
214 |
gtatat |
219 |
Q |
| |
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|||||| |
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| T |
9857938 |
gtatat |
9857933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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