View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_high_19 (Length: 354)

Name: NF11658_high_19
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_high_19
NF11658_high_19
[»] chr6 (3 HSPs)
chr6 (19-80)||(232603-232664)
chr6 (299-348)||(232334-232383)
chr6 (299-348)||(233476-233525)
[»] chr3 (8 HSPs)
chr3 (19-80)||(50809852-50809913)
chr3 (19-80)||(50865949-50866010)
chr3 (299-348)||(50809581-50809630)
chr3 (299-348)||(50810741-50810790)
chr3 (299-348)||(50865074-50865123)
chr3 (299-348)||(50866232-50866281)
chr3 (299-348)||(44602878-44602927)
chr3 (299-343)||(21074114-21074158)
[»] chr8 (5 HSPs)
chr8 (20-80)||(28419228-28419288)
chr8 (299-348)||(28420081-28420130)
chr8 (299-348)||(28418966-28419015)
chr8 (299-348)||(9854713-9854762)
chr8 (300-336)||(6398351-6398387)
[»] chr5 (2 HSPs)
chr5 (302-348)||(223457-223503)
chr5 (300-348)||(22048970-22049018)
[»] chr4 (6 HSPs)
chr4 (302-348)||(38555115-38555161)
chr4 (299-334)||(1520057-1520092)
chr4 (299-334)||(42810037-42810072)
chr4 (299-348)||(45535277-45535326)
chr4 (299-348)||(52138626-52138675)
chr4 (299-336)||(54485452-54485489)
[»] scaffold0011 (1 HSPs)
scaffold0011 (299-336)||(127677-127714)
[»] chr7 (3 HSPs)
chr7 (302-348)||(39981548-39981594)
chr7 (307-348)||(41328451-41328492)
chr7 (308-348)||(48312273-48312313)
[»] chr2 (2 HSPs)
chr2 (299-348)||(4920894-4920943)
chr2 (300-348)||(102233-102281)
[»] chr1 (2 HSPs)
chr1 (299-348)||(51445822-51445871)
chr1 (299-343)||(9226049-9226093)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 232664 - 232603
Alignment:
Q  19 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  232664 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 232603  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 232383 - 232334
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  232383 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 232334  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 233476 - 233525
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  233476 taattagatgttgttgattcactgtaagataaaatagacatgtgtaatcc 233525  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 50809913 - 50809852
Alignment:
Q  19 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50809913 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 50809852  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 50865949 - 50866010
Alignment:
Q  19 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50865949 tgagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 50866010  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 50809630 - 50809581
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50809630 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 50809581  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 50810741 - 50810790
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50810741 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 50810790  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 50865123 - 50865074
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50865123 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 50865074  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 50866232 - 50866281
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50866232 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 50866281  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 44602878 - 44602927
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| ||||||||| |||| ||||||||||||||| | |||||||||    
T  44602878 taattagttgttgttgactcactgtaagataaaatagacacgcgtaatcc 44602927  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 21074114 - 21074158
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgt 343  Q
    ||||||| ||||||||| |||| ||||||||||||||| ||||||    
T  21074114 taattagttgttgttgactcactgtaagataaaatagacatgcgt 21074158  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 28419288 - 28419228
Alignment:
Q  20 gagtttatgaattatccaaaaagtattcaaagattattatccagaatttggggttgttgtg 80  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28419288 gagtttatgaattatccaaaaagtatttaaagattattatccagaatttggggttgttgtg 28419228  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 28420081 - 28420130
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28420081 taattagatgttgttgattcaccgtaagataaaatagacatgcgtaatcc 28420130  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 28419015 - 28418966
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28419015 taattagatgttgttgattcaccgtaagataaaataggcatgcgtaatcc 28418966  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 9854713 - 9854762
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| ||||||||| |||||||||||||||| | | |||||||||||    
T  9854713 taattagttgttgttgactcaccgtaagataaaacacacatgcgtaatcc 9854762  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 6398351 - 6398387
Alignment:
Q  300 aattagatgttgttgattcaccgtaagataaaataga 336  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  6398351 aattaggtgttgttgattcaccgtaagataaagtaga 6398387  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 223503 - 223457
Alignment:
Q  302 ttagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||    
T  223503 ttagatgttgttgactcaccgtaagataaaatagacatgagtaatcc 223457  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 22048970 - 22049018
Alignment:
Q  300 aattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||| || ||||| ||||| ||||||||||||||| |||||||||||    
T  22048970 aattagctgatgttggttcactgtaagataaaatagacatgcgtaatcc 22049018  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 38555115 - 38555161
Alignment:
Q  302 ttagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||    
T  38555115 ttagatgttgttgactcaccgtaagataaaatagacatgtgtaatcc 38555161  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 1520092 - 1520057
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaata 334  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1520092 taattaggtgttgttgattcaccgtaagataaaata 1520057  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 42810037 - 42810072
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaata 334  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42810037 taattagatgttgttgactcaccgtaagataaaata 42810072  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 45535326 - 45535277
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| ||||||||| |||| ||||||||||||||| | |||||||||    
T  45535326 taattagttgttgttgactcactgtaagataaaatagacacgcgtaatcc 45535277  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 52138626 - 52138675
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| |||| |||| |||||||||||||||||| | |||||||||||    
T  52138626 taattagttgttattgactcaccgtaagataaaatacacatgcgtaatcc 52138675  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 54485452 - 54485489
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaataga 336  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  54485452 taattagatgttgttgactcaccgtaagatagaataga 54485489  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 127714 - 127677
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaataga 336  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  127714 taattagatgttgttgactcaccgtaagataaaataga 127677  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 39981594 - 39981548
Alignment:
Q  302 ttagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||| ||||||||| |||||||||||||||||| | |||||||||||    
T  39981594 ttagttgttgttgactcaccgtaagataaaatacacatgcgtaatcc 39981548  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 41328492 - 41328451
Alignment:
Q  307 tgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||||| |||||||||||||||||| | |||||||||||    
T  41328492 tgttgttgactcaccgtaagataaaatacatatgcgtaatcc 41328451  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 48312313 - 48312273
Alignment:
Q  308 gttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  48312313 gttgttgactcaccgtaagataaaatagacctgcgtaatcc 48312273  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 4920894 - 4920943
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| ||||||||| |||||||||||||||||| |  ||||||||||    
T  4920894 taattagttgttgttgactcaccgtaagataaaatacacctgcgtaatcc 4920943  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 102281 - 102233
Alignment:
Q  300 aattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    |||||| |||||||| |||||||||||||||| |||| |||| ||||||    
T  102281 aattaggtgttgttggttcaccgtaagataaagtagatatgcataatcc 102233  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 51445871 - 51445822
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgtaatcc 348  Q
    ||||||| ||||||||| |||||||||||||||||| |  ||||||||||    
T  51445871 taattagttgttgttgactcaccgtaagataaaatacacctgcgtaatcc 51445822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 9226049 - 9226093
Alignment:
Q  299 taattagatgttgttgattcaccgtaagataaaatagaaatgcgt 343  Q
    ||||||||||||  ||| |||||||||||||||||||| ||||||    
T  9226049 taattagatgttaatgactcaccgtaagataaaatagacatgcgt 9226093  T

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