View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_high_26 (Length: 283)

Name: NF11658_high_26
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_high_26
NF11658_high_26
[»] chr2 (4 HSPs)
chr2 (1-261)||(2356208-2356468)
chr2 (5-80)||(22722142-22722217)
chr2 (1-39)||(23747522-23747560)
chr2 (173-209)||(43586027-43586063)
[»] chr5 (1 HSPs)
chr5 (173-209)||(30080523-30080559)
[»] chr1 (2 HSPs)
chr1 (173-209)||(24462292-24462328)
chr1 (173-202)||(18946056-18946085)
[»] chr7 (1 HSPs)
chr7 (173-209)||(5937443-5937479)
[»] chr6 (2 HSPs)
chr6 (173-209)||(10031571-10031607)
chr6 (173-209)||(19369818-19369854)
[»] chr4 (1 HSPs)
chr4 (173-209)||(28663493-28663529)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 2356208 - 2356468
Alignment:
Q  1 ggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaataatggcctcattctaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356208 ggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaataatggcctcattctaaaca 2356307  T
Q  101 agttaagatcaattcannnnnnncaaaatttgaattacannnnnnnccgacacatgtaattacattgaaataattgaattatgtcattttctcaaaattt 200  Q
    ||||||||||||||||       ||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2356308 agttaagatcaattcatttttttcaaaatttgaattacatttttttccgacacatgtaattaaattgaaataattgaattatgtcattttctcaaaattt 2356407  T
Q  201 gatcagtgtgagtgttgcgtcgtgtccggtgtccgtggaaaagatttcttaactaaaatat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356408 gatcagtgtgagtgttgcgtcgtgtccggtgtccgtggaaaagatttcttaactaaaatat 2356468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 22722142 - 22722217
Alignment:
Q  5 ataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaa 80  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||    
T  22722142 ataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccatttatacctacaa 22722217  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23747560 - 23747522
Alignment:
Q  1 ggagataaaatcaatgaaggaaggatgttgatcctcttt 39  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  23747560 ggagataaaatcaatgaaggatggacgttgatcctcttt 23747522  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 43586027 - 43586063
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  43586027 attgaattatgtcattttctcaaaattttatctgtgt 43586063  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 30080523 - 30080559
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30080523 attgaattatgtcattttctcaaaattttatcagtgt 30080559  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 24462292 - 24462328
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24462292 attgaattatgtcattttttcaaaatttgatcagtgt 24462328  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 18946056 - 18946085
Alignment:
Q  173 attgaattatgtcattttctcaaaatttga 202  Q
    ||||||||||||||||||||||||||||||    
T  18946056 attgaattatgtcattttctcaaaatttga 18946085  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 5937443 - 5937479
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  5937443 attgaattatgtcattttctcaaaattttatccgtgt 5937479  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 10031607 - 10031571
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  10031607 attgaattatgtcattttctcaaaattttatcggtgt 10031571  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 19369854 - 19369818
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  19369854 attgaattatgtcattttctcaaaattttatccgtgt 19369818  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 28663529 - 28663493
Alignment:
Q  173 attgaattatgtcattttctcaaaatttgatcagtgt 209  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  28663529 attgaattatgtcattttctcaaaattttatccgtgt 28663493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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