View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_high_29 (Length: 256)

Name: NF11658_high_29
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_high_29
NF11658_high_29
[»] chr7 (3 HSPs)
chr7 (104-240)||(5229943-5230079)
chr7 (104-240)||(28470160-28470296)
chr7 (172-224)||(5251524-5251576)
[»] chr6 (2 HSPs)
chr6 (104-239)||(5652862-5652997)
chr6 (104-240)||(22611472-22611608)
[»] chr3 (3 HSPs)
chr3 (104-236)||(38396689-38396821)
chr3 (169-236)||(249358-249425)
chr3 (190-237)||(19142284-19142331)
[»] chr8 (3 HSPs)
chr8 (104-240)||(34830916-34831052)
chr8 (104-240)||(12811954-12812090)
chr8 (104-234)||(27527495-27527625)
[»] chr4 (2 HSPs)
chr4 (104-240)||(45671373-45671509)
chr4 (112-176)||(45690263-45690327)
[»] chr5 (1 HSPs)
chr5 (127-236)||(20543523-20543632)
[»] chr2 (3 HSPs)
chr2 (104-214)||(30642907-30643017)
chr2 (172-239)||(5546380-5546447)
chr2 (124-239)||(25524815-25524930)
[»] chr1 (1 HSPs)
chr1 (139-240)||(46039617-46039718)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 5229943 - 5230079
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5229943 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 5230042  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5230043 actttctgttctttgtgatgctgaggttgctcttatc 5230079  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 28470160 - 28470296
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||| ||||| || |||||  ||||||||||||| ||||| || ||| | |||||||| ||  | || |||||||||||| | || || ||||| |||||    
T  28470160 tgggtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatga 28470259  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
    ||| || ||||| |||||||| ||| |||||||||||    
T  28470260 actctcagttctatgtgatgctgagattgctcttatc 28470296  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 5251524 - 5251576
Alignment:
Q  172 agaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgc 224  Q
    ||||||| ||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  5251524 agaagaactggacttctcaagaaagctaatgaaatttctgttctttgtgatgc 5251576  T

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Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 5652862 - 5652997
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  5652862 tgggaagaggaagagtggaattgaaaaggatagagaataagataaacagacaagtaacatttgcaaagagaagaaatggacttcttaagaaagcttatga 5652961  T
Q  204 actttctgttctttgtgatgccgaggttgctcttat 239  Q
    | | ||||||||||||||||| || |||||||||||    
T  5652962 attatctgttctttgtgatgctgaagttgctcttat 5652997  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 22611472 - 22611608
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||||||||||||||| | |||| |||| |||||||| ||||| || || ||||| |||||  | |||||||||| |||  |  | |||||||| | |||    
T  22611472 tgggaagaggaagagtagtgttggagagaatagagaataagatcaataggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttga 22611571  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
     |||| |||||| |||||||| || ||||| ||||||    
T  22611572 gctttgtgttctatgtgatgctgaagttgcacttatc 22611608  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 38396689 - 38396821
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||  |||||||||||||| | || |||||||||||    
T  38396689 tgggaagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatga 38396788  T
Q  204 actttctgttctttgtgatgccgaggttgctct 236  Q
    ||||||||||||||||||||| |||||||||||    
T  38396789 actttctgttctttgtgatgcagaggttgctct 38396821  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 249425 - 249358
Alignment:
Q  169 aagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgccgaggttgctct 236  Q
    |||||||| ||||| ||||| ||||||||||||||||| || ||| | |||||||| || ||||||||    
T  249425 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctct 249358  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 19142331 - 19142284
Alignment:
Q  190 aagaaagcttatgaactttctgttctttgtgatgccgaggttgctctt 237  Q
    ||||||||||||||| | || ||||||||||||||||| |||||||||    
T  19142331 aagaaagcttatgaattatccgttctttgtgatgccgaagttgctctt 19142284  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 34831052 - 34830916
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||||||||||||||||||||||||||| || |||||||| || |||||||||||||| || |||||  |||| || |||||| | || |||||||||||    
T  34831052 tgggaagaggaagagttgagttgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagcttatga 34830953  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
    ||||||||||||||||||||| || ||||||||||||    
T  34830952 actttctgttctttgtgatgctgaagttgctcttatc 34830916  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 12812090 - 12811954
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||||| | || || || ||  | || |||||||||||| | || ||||||||||||||    
T  12812090 tgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatga 12811991  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
    ||| |||||||| |||||||| || ||||| ||||||    
T  12811990 actgtctgttctctgtgatgctgaagttgcccttatc 12811954  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 27527625 - 27527495
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    ||||||| || || ||| |||||||||||||||| |||||||| ||  | || ||||| ||  |||| || |||  ||| ||||| ||||||||| ||||    
T  27527625 tgggaaggggtagggttcagttgaagaggatagaaaacaagatcaatcgtcaggttactttctctaaaaggagagctggacttctcaagaaagctcatga 27527526  T
Q  204 actttctgttctttgtgatgccgaggttgct 234  Q
      | ||||||||||||||||| || ||||||    
T  27527525 gatctctgttctttgtgatgctgaagttgct 27527495  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 45671373 - 45671509
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    |||||||||| ||||||||  | ||||| |||||||||||  | || |||||||| |||||||||||||||||||||||| | || ||||| ||||||||    
T  45671373 tgggaagagggagagttgaactaaagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggcttatga 45671472  T
Q  204 actttctgttctttgtgatgccgaggttgctcttatc 240  Q
    |||||| |||||||||||||| || ||||||||||||    
T  45671473 actttcagttctttgtgatgctgaagttgctcttatc 45671509  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 45690263 - 45690327
Alignment:
Q  112 ggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaag 176  Q
    ||||||||  ||||||||||||| ||||||||||| || |||||||| || ||| | ||||||||    
T  45690263 ggaagagtgcagttgaagaggattgagaacaagatcaatagacaagtcactttttcaaagagaag 45690327  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 20543632 - 20543523
Alignment:
Q  127 aagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgccg 226  Q
    |||||||| |||||||| |||||  | |||||||||||||| ||||||||||||||  | || ||||| ||||||||||| ||| | ||||||||||| |    
T  20543632 aagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttatgaactctctctcctttgtgatgctg 20543533  T
Q  227 aggttgctct 236  Q
    ||||||||||    
T  20543532 aggttgctct 20543523  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 30643017 - 30642907
Alignment:
Q  104 tgggaagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatga 203  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||   ||||  || ||  | ||||||||||||||| | || || |||||||||||    
T  30643017 tgggaagaggaagagttgaattgaagagaatagagaacaaaataaaccagcaagcaactttctcaaagagaagaaatggtttgctcaaaaaagcttatga 30642918  T
Q  204 actttctgttc 214  Q
    ||| |||||||    
T  30642917 actgtctgttc 30642907  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 5546380 - 5546447
Alignment:
Q  172 agaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgccgaggttgctcttat 239  Q
    |||||||||||| |  | |||||||| |||||| | ||||||||||||||||| || |||||||||||    
T  5546380 agaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttat 5546447  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 25524815 - 25524930
Alignment:
Q  124 ttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatg 223  Q
    ||||||| ||| ||||||||||| || || ||||| || ||| | |||||||||  |||| | || ||||||||| ||||  | ||||| ||||||||||    
T  25524815 ttgaagaagattgagaacaagatcaataggcaagtaactttttcaaagagaagatctggtttactcaagaaagctcatgagatctctgtgctttgtgatg 25524914  T
Q  224 ccgaggttgctcttat 239  Q
    | || |||||||||||    
T  25524915 ctgaagttgctcttat 25524930  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 46039718 - 46039617
Alignment:
Q  139 aacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgccgaggttgctctta 238  Q
    |||||||| || |||||||| |||||| | |||||||||| |||| |  | |||||||||| ||||||||||||  | |||||||| || ||||||||||    
T  46039718 aacaagatcaatagacaagtaacattttcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctctta 46039619  T
Q  239 tc 240  Q
    ||    
T  46039618 tc 46039617  T

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