View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_high_3 (Length: 702)
Name: NF11658_high_3
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 670
Target Start/End: Original strand, 32210301 - 32210968
Alignment:
| Q |
1 |
gtatgctaaattggatgatcagaaaggtgttggatcatatgttgataaagctgctgattatctgcataagtatgagaacactactactgctactccacca |
100 |
Q |
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| T |
32210301 |
gtatgctaaattggatgatcagaaaggtgtaggatcatatgttgataaagctgctgattatctgcataagtatgagaacactactactgctactccacca |
32210400 |
T |
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| Q |
101 |
gcttctaaacctgcagatcagcccaaaagtgatgaagctgctaagcctgaaggtgaaggatcaggtgggattggtggactaggtggtgattttgctaagg |
200 |
Q |
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| T |
32210401 |
gcttctaaacctgcagatcagcccaaaagtgatgaagctgctaagcctgaaggtgaaggatcaggtgggattggtggactaggtggtgattttgctaagg |
32210500 |
T |
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| Q |
201 |
ttgctggaggtttctttaaatgaacaaaatcaactgatttggtttcagcatgcatgcatattcttgtgtgttgattaataaggacactttatttgccgtc |
300 |
Q |
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| T |
32210501 |
ttgctggaggtttctttaaatgaacaaaatcaactgatttggtttca----gcatgcatattcttgtgtgttgattaataaggacactttatttgccgtc |
32210596 |
T |
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| Q |
301 |
cctttcattattgttatgttggtatcttatcatataattcatataggataggatatagtaatgtgtgataatggatcaaatatgtaaggtatggtaacag |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32210597 |
cctttcattattattatgttggtatcttatcatataattcatataggataggatatagtaatgtgtgataatggatcaaatatgtaaggtatggtaacag |
32210696 |
T |
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| Q |
401 |
agtttgttctgctctctactttattatagtttgaaccaagatcatggctatgtagtttgtttatgtgtttcctaattctgttgcacatatatattaagaa |
500 |
Q |
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| T |
32210697 |
agtttgttctgctctctactttattatagtttgaaccaagatcatggctatgtagtttgtttatgtttttcctaattctgttgcacatatatattaagaa |
32210796 |
T |
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| Q |
501 |
aataggggtg---ttcaatcctgtttcctttctagtattttgttctctttttggcttcatgaaattttgttcctagttttgtgaaaagtcgctctagact |
597 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32210797 |
aataggggtgaacttcaatcctgtttcctttctagtattttgttctc-ttttggcttcatgaaattttgttcctagttttgtgaaaagtcgctctagact |
32210895 |
T |
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| Q |
598 |
tctagtatcagttatcatgtttatgtttatgactaatggtttcctcctagttggaagttgtaaacttggaatt |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32210896 |
tctagtatcagttatcatgtttatgtttatgactaatggtttcctcctagttggaagttgtaaacttggaatt |
32210968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32190926 - 32190992
Alignment:
| Q |
1 |
gtatgctaaattggatgatcagaaaggtgttggatcatatgttgataaagctgctgattatctgcat |
67 |
Q |
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|||||||||||||||||||||||| || | ||| ||||||||||| |||||||||||||||||| |
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| T |
32190926 |
gtatgctaaattggatgatcagaaggggttaggacagtatgttgataaggctgctgattatctgcat |
32190992 |
T |
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