View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11658_high_36 (Length: 239)
Name: NF11658_high_36
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_36 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 15397379 - 15397597
Alignment:
| Q |
21 |
tctctgtgatttcgtcttctgagtgcggctatgtgttgttcatcgtcttatacgtcattctttggttcttcatcttgttgtaattatcatttggttcatt |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15397379 |
tctctgtgatttcgtcgtctgagtgcggctatgtgttgtttatcatcttatacgccattgtttggttcttcgtcttgttgcaattatcatttggttcatt |
15397478 |
T |
|
| Q |
121 |
ttaaaagatcaattattcaaactatgatttgagcatcaatattgtatattcaaaaacatgaaattttcaataactttaatcttatcatataatttatagg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15397479 |
ttaaaagatcaattattcaaactatgatttgagcatcaatgttgcagattcaaaaatatgaatttttcaatgactttaatcttatcatataatttatagg |
15397578 |
T |
|
| Q |
221 |
atattgttgtatgttatta |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
15397579 |
atattgttgtatgttatta |
15397597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 29173849 - 29173802
Alignment:
| Q |
25 |
tgtgatttcgtcttctgagtgcggctatgtgttgttcatcgtcttata |
72 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
29173849 |
tgtgatttcgtcgtctaagtgcggcgttgtgttgttcatcgtcttata |
29173802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 36323832 - 36323874
Alignment:
| Q |
18 |
ttttctctgtgatttcgtcttctgagtgcggctatgtgttgtt |
60 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
36323832 |
ttttctctgtgatttcgtcgtttgagtgcggctttgtgttgtt |
36323874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 29120492 - 29120443
Alignment:
| Q |
25 |
tgtgatttcgtcttctgagtgcggctatgtgttgttcatcgtcttatacg |
74 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
29120492 |
tgtgatttcgtcgtctaagtgcggcgctgtgttgttcatcgtcttgtacg |
29120443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 51888342 - 51888297
Alignment:
| Q |
26 |
gtgatttcgtcttctgagtgcggctatgtgttgttcatcgtcttat |
71 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
51888342 |
gtgatttcgttgtctgagtgcggcgttgtgttgttcatcgtcttat |
51888297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 5775172 - 5775224
Alignment:
| Q |
32 |
tcgtcttctgagtgcggctatgtgttgttcatcgtcttatacgtcattctttg |
84 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| || |||| |||| |
|
|
| T |
5775172 |
tcgtcgtctgagtgcggcgttgtgttgttcatcgtcttatgcggcattatttg |
5775224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University