View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_high_38 (Length: 229)

Name: NF11658_high_38
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_high_38
NF11658_high_38
[»] chr2 (12 HSPs)
chr2 (122-227)||(17465924-17466029)
chr2 (7-63)||(17466119-17466175)
chr2 (7-54)||(7412179-7412226)
chr2 (7-60)||(38984977-38985031)
chr2 (7-60)||(31814333-31814386)
chr2 (7-54)||(37607189-37607236)
chr2 (7-61)||(31091516-31091570)
chr2 (12-54)||(34582664-34582706)
chr2 (23-63)||(2910178-2910218)
chr2 (23-63)||(7073717-7073757)
chr2 (31-63)||(17466841-17466873)
chr2 (7-63)||(31090242-31090298)
[»] chr3 (13 HSPs)
chr3 (7-60)||(19115136-19115189)
chr3 (7-63)||(36280306-36280362)
chr3 (7-63)||(47118040-47118096)
chr3 (7-60)||(47428552-47428605)
chr3 (23-61)||(17700598-17700636)
chr3 (23-61)||(17701924-17701962)
chr3 (7-61)||(33427831-33427885)
chr3 (7-61)||(45600928-45600982)
chr3 (7-61)||(47075340-47075394)
chr3 (7-60)||(33428424-33428477)
chr3 (14-63)||(36279030-36279079)
chr3 (30-63)||(48573063-48573096)
chr3 (141-204)||(20221466-20221530)
[»] chr4 (6 HSPs)
chr4 (7-59)||(39869002-39869054)
chr4 (7-63)||(26172931-26172987)
chr4 (7-54)||(21621910-21621957)
chr4 (7-54)||(32244361-32244408)
chr4 (7-58)||(48740009-48740060)
chr4 (7-61)||(53771038-53771092)
[»] chr7 (7 HSPs)
chr7 (7-61)||(13578310-13578363)
chr7 (23-63)||(10899078-10899118)
chr7 (7-58)||(34888912-34888963)
chr7 (23-60)||(45584501-45584538)
chr7 (23-63)||(7258353-7258393)
chr7 (31-63)||(44530624-44530656)
chr7 (31-63)||(48788685-48788717)
[»] chr8 (4 HSPs)
chr8 (7-60)||(5965431-5965484)
chr8 (23-61)||(32898450-32898488)
chr8 (23-61)||(35177475-35177513)
chr8 (7-63)||(5736920-5736976)
[»] chr1 (10 HSPs)
chr1 (7-60)||(5783098-5783151)
chr1 (7-60)||(22857568-22857621)
chr1 (7-63)||(6612497-6612553)
chr1 (7-63)||(22856758-22856814)
chr1 (7-60)||(7944236-7944289)
chr1 (23-63)||(7945559-7945599)
chr1 (23-59)||(9339728-9339764)
chr1 (31-63)||(10333199-10333231)
chr1 (28-60)||(32665780-32665812)
chr1 (7-63)||(50107192-50107248)
[»] chr5 (6 HSPs)
chr5 (23-61)||(4592941-4592979)
chr5 (7-61)||(32641715-32641769)
chr5 (23-60)||(546041-546078)
chr5 (7-60)||(18004719-18004772)
chr5 (7-63)||(14891136-14891192)
chr5 (7-63)||(16611806-16611862)
[»] scaffold0767 (1 HSPs)
scaffold0767 (8-61)||(5679-5732)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 17466029 - 17465924
Alignment:
Q  122 tcaaatagtctaatgactgaaattcattttaatgtgaataagtgagatgtccaaagttggaacaccgacctctatatataataatgaatcgtctttatca 221  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17466029 tcaaatagtctaatgaccgaaattcattttaatgtgaataagtgagatgtccaaagttggaacaccgacctctatatataataatgaatcatctttatca 17465930  T
Q  222 attgag 227  Q
    ||||||    
T  17465929 attgag 17465924  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 17466175 - 17466119
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  17466175 ttaacataattgtttcacgtcagggactaaagtgaaaacggaagtgcagagtcagag 17466119  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 7412226 - 7412179
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgca 54  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  7412226 ttaacataattatttaatgttagggactaaagtgataacggaagtgca 7412179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 38984977 - 38985031
Alignment:
Q  7 ttaacataatt-atttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    ||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||    
T  38984977 ttaacataatttatttaacgttagtgactaaagtgataacggaagtgcagagtca 38985031  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 31814333 - 31814386
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||| |||||||| | | ||||||||||||||| ||||||||||||||||||    
T  31814333 ttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtca 31814386  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 37607236 - 37607189
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgca 54  Q
    ||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  37607236 ttaacataattatataacgtcagggactaaagtgataacggaagtgca 37607189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 31091516 - 31091570
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||||| || ||| |||| || ||||||||||| |||||||||||||||||||    
T  31091516 ttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcag 31091570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 34582664 - 34582706
Alignment:
Q  12 ataattatttcacgttagggactaaagtgaaaacggaagtgca 54  Q
    |||||||||| |||| |||||||||||||| ||||||||||||    
T  34582664 ataattatttaacgtcagggactaaagtgataacggaagtgca 34582706  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2910218 - 2910178
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  2910218 acgtcagggactaaagtgacaaaggaagtgcagagtcagag 2910178  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 7073757 - 7073717
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| |||||||||||||| |||||||||||||| ||||||    
T  7073757 acgtcagggactaaagtgataacggaagtgcagaatcagag 7073717  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 17466841 - 17466873
Alignment:
Q  31 gactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| |||||||||||||||||||||    
T  17466841 gactaaagtgataacggaagtgcagagtcagag 17466873  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 31090298 - 31090242
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||||| || ||| |||| |||||||||| | | |||||||||||||||||||||    
T  31090298 ttaacatatttttttaacgtcagggactaaaatcataacggaagtgcagagtcagag 31090242  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 19115136 - 19115189
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  19115136 ttaacagaattatttaacgttagggactaaagtaaaaacggaagtgcagagtca 19115189  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 36280306 - 36280362
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||||| || ||| |||| |||||||||||||| |||||||||||||||||||||    
T  36280306 ttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagag 36280362  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 47118040 - 47118096
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||| |||||||| |||| |||||||||||||| |||| ||||||||||||||||    
T  47118040 ttaacaaaattatttaacgtcagggactaaagtgataacgaaagtgcagagtcagag 47118096  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 47428552 - 47428605
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    ||||||||||||||| ||||||  |||| |||||| ||||||||||||||||||    
T  47428552 ttaacataattatttaacgttatagactgaagtgataacggaagtgcagagtca 47428605  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 17700636 - 17700598
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  17700636 acgtcagggactaaagtgataacggaagtgcagagtcag 17700598  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 17701924 - 17701962
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  17701924 acgtcagggactaaagtgataacggaagtgcagagtcag 17701962  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 33427885 - 33427831
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    ||||||||||||||| | |||||  |||||||||| |||| ||||||||||||||    
T  33427885 ttaacataattatttaatgttagatactaaagtgataacgaaagtgcagagtcag 33427831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 45600928 - 45600982
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||| |||||||| ||||   |||||||||||| |||||||||||||||||||    
T  45600928 ttaacagaattatttaacgtcgtggactaaagtgataacggaagtgcagagtcag 45600982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 47075340 - 47075394
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||| |||||||| |||| || ||||||||||| |||||||||| ||||||||    
T  47075340 ttaacaaaattatttaacgtcagagactaaagtgataacggaagtgtagagtcag 47075394  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 33428424 - 33428477
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    ||||||||||||||| ||| |  |||||||||||| ||||||| ||||||||||    
T  33428424 ttaacataattatttaacgctgaggactaaagtgacaacggaaatgcagagtca 33428477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 36279079 - 36279030
Alignment:
Q  14 aattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| ||| |||| |||||||||| ||| |||||||||||||||||||||    
T  36279079 aattttttaacgtcagggactaaaatgataacggaagtgcagagtcagag 36279030  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 48573096 - 48573063
Alignment:
Q  30 ggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||||||||| |||||||||||||||||||||    
T  48573096 ggactaaagtgataacggaagtgcagagtcagag 48573063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 20221530 - 20221466
Alignment:
Q  141 aaattcattttaat-gtgaataagtgagatgtccaaagttggaacaccgacctctatatataata 204  Q
    |||||||||||||  ||||||||||| ||||||| | ||| ||||||||||| ||| ||||||||    
T  20221530 aaattcattttaaaagtgaataagtgggatgtccgaggttcgaacaccgacccctacatataata 20221466  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 39869054 - 39869002
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtc 59  Q
    ||||||||||||||| |||| || ||||||||||| |||||||||||||||||    
T  39869054 ttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtc 39869002  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 26172931 - 26172987
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| ||| |||  | |||||||||||| |||||||||||||||||||||    
T  26172931 ttaacataattttttaacggcatggactaaagtgataacggaagtgcagagtcagag 26172987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 21621957 - 21621910
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgca 54  Q
    ||||||||||||||| || | |||||||||||||| ||||||||||||    
T  21621957 ttaacataattatttaacatcagggactaaagtgataacggaagtgca 21621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 32244408 - 32244361
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgca 54  Q
    ||||||||||||||| |||||| |||| ||||||| ||||||||||||    
T  32244408 ttaacataattatttaacgttatggaccaaagtgataacggaagtgca 32244361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 48740009 - 48740060
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagt 58  Q
    |||||| |||||||| |||| |||||||||||||| ||| ||||||||||||    
T  48740009 ttaacagaattatttaacgtcagggactaaagtgataacagaagtgcagagt 48740060  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 53771038 - 53771092
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||| |||||||| |||| |  ||||||||||| |||||||||||||||||||    
T  53771038 ttaacagaattatttaacgtcaatgactaaagtgataacggaagtgcagagtcag 53771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 13578310 - 13578363
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    ||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||    
T  13578310 ttaacataattatttaacgtcagg-actaaagtgataacggaagtgcagagtcag 13578363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 10899078 - 10899118
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  10899078 acgtcagggactaaagtgataacggaagtgcagagtcagag 10899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 34888912 - 34888963
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagt 58  Q
    ||||||||||||||  |||| | |||||||||||| ||||||||||||||||    
T  34888912 ttaacataattattaaacgtcaaggactaaagtgataacggaagtgcagagt 34888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 45584501 - 45584538
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  45584501 acgtcagggactaaagtgataacggaagtgcagagtca 45584538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 7258393 - 7258353
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  7258393 acgtcagggactaaagtgataacagaagtgcagagtcagag 7258353  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 44530624 - 44530656
Alignment:
Q  31 gactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| |||||||||||||||||||||    
T  44530624 gactaaagtgataacggaagtgcagagtcagag 44530656  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 48788685 - 48788717
Alignment:
Q  31 gactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| |||||||||||||||||||||    
T  48788685 gactaaagtgataacggaagtgcagagtcagag 48788717  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 5965431 - 5965484
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||||||| |||| |||| || ||||||||||| ||||||||||||||||||    
T  5965431 ttaacataatcatttaacgtcagagactaaagtgataacggaagtgcagagtca 5965484  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 32898450 - 32898488
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  32898450 acgtcagggactaaagtgataacggaagtgcagagtcag 32898488  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 35177513 - 35177475
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  35177513 acgtcagggactaaagtgataacggaagtgcagagtcag 35177475  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 5736976 - 5736920
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||| |||||||| |||| |||||||||||||| |||| ||||| ||||| ||||    
T  5736976 ttaacaaaattatttaacgtgagggactaaagtgataacgaaagtgtagagttagag 5736920  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 5783098 - 5783151
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||| |||||||| ||| ||| ||||||||||| ||||||||||||||||||    
T  5783098 ttaacagaattatttaacgctagtgactaaagtgataacggaagtgcagagtca 5783151  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 22857568 - 22857621
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    ||||||||||||||| |||| | |||||||||||| |||||||||||| |||||    
T  22857568 ttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaagtca 22857621  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 6612553 - 6612497
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||| |||||||| |||| ||||| |||||||| || ||||||||||||||||||    
T  6612553 ttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagag 6612497  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 22856814 - 22856758
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||||||| ||||  | ||||||||||| |||||||||||||||| ||||    
T  22856814 ttaacataattatttaacgtcggagactaaagtgataacggaagtgcagagttagag 22856758  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 7944289 - 7944236
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||||| || ||| ||||||||||||||| ||| |||| |||||||||||||    
T  7944289 ttaacatatttttttaacgttagggactaaattgataacgaaagtgcagagtca 7944236  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 7945559 - 7945599
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  7945559 acgtcagggactaaagtgataacggaagtgcatagtcagag 7945599  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 9339764 - 9339728
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtc 59  Q
    |||| |||||||||||||| |||||||||||||||||    
T  9339764 acgtcagggactaaagtgataacggaagtgcagagtc 9339728  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 10333199 - 10333231
Alignment:
Q  31 gactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||| |||||||||||||||||||||    
T  10333199 gactaaagtgataacggaagtgcagagtcagag 10333231  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 32665780 - 32665812
Alignment:
Q  28 agggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||||||||||||| ||||||||||||||||||    
T  32665780 agggactaaagtgataacggaagtgcagagtca 32665812  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 50107192 - 50107248
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    ||||||||||||||| |||  | |||||||||||| |||||||||||| | ||||||    
T  50107192 ttaacataattatttaacgccaaggactaaagtgataacggaagtgcacattcagag 50107248  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 4592979 - 4592941
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  4592979 acgtcagggactaaagtgataacggaagtgcagagtcag 4592941  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 32641715 - 32641769
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||||| || ||| |||| ||||| |||||||| |||||||||||||||||||    
T  32641715 ttaacatatttttttaacgtcagggattaaagtgataacggaagtgcagagtcag 32641769  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 546041 - 546078
Alignment:
Q  23 acgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  546041 acgtcagggactaaagtgataacggaagtgcagagtca 546078  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 18004772 - 18004719
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtca 60  Q
    ||||||||| ||||| || | || ||||||||||| ||||||||||||||||||    
T  18004772 ttaacataactatttaacatcagagactaaagtgataacggaagtgcagagtca 18004719  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 14891136 - 14891192
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||||| || ||| |||| || ||||||||||| |||||||||| ||||||||||    
T  14891136 ttaacatatttttttaacgtcagagactaaagtgataacggaagtgtagagtcagag 14891192  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 16611862 - 16611806
Alignment:
Q  7 ttaacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcagag 63  Q
    |||||| |||||||| |||| || ||||||||||| |||||||||||| | ||||||    
T  16611862 ttaacagaattatttaacgtcagagactaaagtgataacggaagtgcataatcagag 16611806  T

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Target: scaffold0767 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5732 - 5679
Alignment:
Q  8 taacataattatttcacgttagggactaaagtgaaaacggaagtgcagagtcag 61  Q
    |||||||||||||| |||  || ||||||||||| |||||||||| ||||||||    
T  5732 taacataattatttaacgccagagactaaagtgataacggaagtgtagagtcag 5679  T

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