View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_high_9 (Length: 470)
Name: NF11658_high_9
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 280 - 458
Target Start/End: Complemental strand, 38092127 - 38091946
Alignment:
| Q |
280 |
tcccaggcccaggctgcattatcttatgtaggtgtttttgtccttctactatcataaatcataaatgaattaatatttcctattatttttgggtacatgt |
379 |
Q |
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| T |
38092127 |
tcccaggcccaggctgcattatcttatgtaggtgtttttgtccttctactatcataaatcataaatgaattaatatttcctattatttttgggtacatgt |
38092028 |
T |
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| Q |
380 |
atatgttctagctagtcattggtcactcacacgttgaact---gttaagtgacacgttatggacgatgaatggggcttgttc |
458 |
Q |
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| T |
38092027 |
atatgttctagctagtcattggtcactcacacgttgaactgtagtaaagtgacacgttatggatgatcaatggggcttgttc |
38091946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 38092349 - 38092194
Alignment:
| Q |
44 |
tattaccaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaacaggtggagggcatttcctaatagatcattttcat |
143 |
Q |
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| T |
38092349 |
tattatcaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaacaggtggagggcatttcctaatagatcattttcat |
38092250 |
T |
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| Q |
144 |
ttgatgactcattcaattgtaatccaacaactcattcatgttctgacatttccgtt |
199 |
Q |
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| T |
38092249 |
ttgatgactcattcaattgtaatccaacaactcattcatgttctgacatttccgtt |
38092194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 458
Target Start/End: Complemental strand, 38094671 - 38094553
Alignment:
| Q |
341 |
taaatgaattaatatttcctattatttttgggtacatgtatatgttctagctagtcattggtcactcacacgttgaactgt--taa-gtgacacgttatg |
437 |
Q |
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| T |
38094671 |
taaatgaatttatttttcctattatttttgg-tagatgtatgtact-tacttagtcattggtcagttacacgttgaattgtagtaacgtgacacgttatg |
38094574 |
T |
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| Q |
438 |
gacgatgaatggggcttgttc |
458 |
Q |
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| T |
38094573 |
gatgatgaatgggacttgttc |
38094553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 38087587 - 38087522
Alignment:
| Q |
392 |
tagtcattggtcactcacacgttgaact---gttaagtgacacgttatggacgatgaatggggctt |
454 |
Q |
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| T |
38087587 |
tagtcattggtcagtcacacgttgaactgtagtaaagcgacacgttatggatgatcaatggggctt |
38087522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 38087677 - 38087626
Alignment:
| Q |
280 |
tcccaggcccaggctgcattatcttatgtagg--tgtttttgtccttctact |
329 |
Q |
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| T |
38087677 |
tccctggcccaggtagcattatcttatgtaggggtgtttttgtccttctact |
38087626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 38087842 - 38087794
Alignment:
| Q |
147 |
atgactcattcaattgtaatccaacaactcattcatgttctgacatttc |
195 |
Q |
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| T |
38087842 |
atgactcatccaattgtaatccaacaacccactcacgttatgacatttc |
38087794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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