View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_16 (Length: 383)
Name: NF11658_low_16
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 12097781 - 12097509
Alignment:
| Q |
18 |
atatgcatgttttctagactctaagcatctcttctatcctcgttactattctacactaaagtgttcaattgtcttatatcatattttgaaacgtctcaac |
117 |
Q |
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| T |
12097781 |
atatgcatgttttctagactctaagcatctcttctatcctcgttactattctacactaaagtgttcaattgtcttatatcatatttcgaaacgtctcaac |
12097682 |
T |
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| Q |
118 |
aacacactctaaaagtctaaagattctccaccgttgcctttccaatacaaaacatatcatcaacctttaatatgtttcacataataggatatgagagtgt |
217 |
Q |
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| T |
12097681 |
aacaccttc--agagtctaaagattctccaccgttgcctttccaatacaaaacatagcatcaacctttaatatgtttcacataataggataggagagtgt |
12097584 |
T |
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| Q |
218 |
atattttaaggagtataatgtaatttaaacatctccgaatgagagtgtaatttactcaaattcatcatcagcgac |
292 |
Q |
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| T |
12097583 |
atattttaaggagtataatgtaatttaaacatctccgaatgagagtgtaatttactcaaactcatcatctgcgac |
12097509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 12097483 - 12097409
Alignment:
| Q |
291 |
acttgactttgaattctctctctttagtctccaaacagtttctcttcatcacagaccgtcttcgattttcactta |
365 |
Q |
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| T |
12097483 |
acttgactttgaattctctctctttagtctccaaacaatttctcttcatcagagaccgtcttcgattttcactta |
12097409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 11796339 - 11796261
Alignment:
| Q |
18 |
atatgcatgttttctagactct-aagcatctcttctatcctcgttactattctacactaaagtgttcaattgtcttatat |
96 |
Q |
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| T |
11796339 |
atatgcatgttc-ctagactcttaagcatctcttctctccttgttactattctactataaagtgctcaattgtcgtatat |
11796261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 7132607 - 7132543
Alignment:
| Q |
299 |
ttgaattctctctctttagtctccaaacagtttctcttcatcacagaccgtcttcgattttcact |
363 |
Q |
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| T |
7132607 |
ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact |
7132543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 7135530 - 7135466
Alignment:
| Q |
299 |
ttgaattctctctctttagtctccaaacagtttctcttcatcacagaccgtcttcgattttcact |
363 |
Q |
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| T |
7135530 |
ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact |
7135466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 566687 - 566622
Alignment:
| Q |
299 |
ttgaattctctctctttagtctccaaacagtttctcttcatcacagaccgtcttcgattttcactt |
364 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
566687 |
ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcactt |
566622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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