View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_18 (Length: 360)
Name: NF11658_low_18
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 14703958 - 14703626
Alignment:
| Q |
19 |
aacttggtaaacatttctttgaccctgaatactactaattcatggaattgataacagataaaaggtgtcagataaaatagtcaattattaaacaaactct |
118 |
Q |
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| T |
14703958 |
aacttggtaaacatttctttgaccctgaatactactaattcatggagttgataacagataaaaggtgtcagataaaatagtcaattattaaacaaactct |
14703859 |
T |
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| Q |
119 |
aaagtgtcacaaattgttatctctagattgaacctacttaattcatgtttcattaccaagacaagagcatctcnnnnnnncagaaggaaaatgacttcat |
218 |
Q |
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| T |
14703858 |
aaagtgtcacaaattgttatctctagattgaacctacttaattcatgtttcattaccaagacaagagcatctctttttttcagaaggaaaatgacttcat |
14703759 |
T |
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| Q |
219 |
tagatgcatgcagctttcttccttgtcatatatgcagaagagtgagctttcttattcattcattcactcaaatggtgtcctttccaagatggaatttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14703758 |
tagatgcatgcagctttcttccttgtcatatatgcagaagagtgagctttcttattcattcattcactcaaatggtgtcctttccaagatggaatttctt |
14703659 |
T |
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| Q |
319 |
ggtacctttcttccacggtatccttgttcttct |
351 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
14703658 |
ggtacctttcttccacggaatccttgttcttct |
14703626 |
T |
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