View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_20 (Length: 351)
Name: NF11658_low_20
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_20 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 7765486 - 7765825
Alignment:
| Q |
12 |
aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7765486 |
aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccaccggatcgaaaagacaaatacttatgtctgctt |
7765585 |
T |
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| Q |
112 |
ttaatactaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc |
211 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7765586 |
ttaataccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc |
7765685 |
T |
|
| Q |
212 |
agttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7765686 |
cgttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga |
7765785 |
T |
|
| Q |
312 |
gaaggagaaggagtggtttttaatggggctattcattggt |
351 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
7765786 |
gaaggagaaggggtggtttttaatggggctattcattggt |
7765825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 7786308 - 7786647
Alignment:
| Q |
12 |
aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctt |
111 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7786308 |
aaagggtcatgtagaggttttatatttatgtatcgtcatccaaacatttacatatggaatccatccaccggatcgaaaagacaaatacttatgtctgctt |
7786407 |
T |
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| Q |
112 |
ttaatactaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7786408 |
ttaataccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctt |
7786507 |
T |
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| Q |
212 |
agttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
7786508 |
agttggtgttcctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattataga |
7786607 |
T |
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| Q |
312 |
gaaggagaaggagtggtttttaatggggctattcattggt |
351 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
7786608 |
gaaggagaaggggtggtttttaatggggctattcattggt |
7786647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 37826998 - 37826938
Alignment:
| Q |
227 |
atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac |
287 |
Q |
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|||||||||||||||||||||||| ||||| ||| | |||| |||||| |||||||||||| |
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| T |
37826998 |
atcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcac |
37826938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 49048577 - 49048517
Alignment:
| Q |
227 |
atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac |
287 |
Q |
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| T |
49048577 |
atcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcac |
49048517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 45372072 - 45372006
Alignment:
| Q |
228 |
tcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttacctt |
294 |
Q |
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|||||||||||||||||||| || | ||| |||||||||| |||| | |||||||||||||| |||| |
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| T |
45372072 |
tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttccctt |
45372006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 7813467 - 7813523
Alignment:
| Q |
131 |
taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt |
187 |
Q |
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| T |
7813467 |
taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt |
7813523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 7822956 - 7823012
Alignment:
| Q |
131 |
taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt |
187 |
Q |
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||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| |||| |
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| T |
7822956 |
taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt |
7823012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 7877594 - 7877689
Alignment:
| Q |
18 |
tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctttt |
113 |
Q |
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||||| ||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||| ||| |||| |||||||| | ||||| ||||| |
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| T |
7877594 |
tcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcctttt |
7877689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 7800693 - 7800755
Alignment:
| Q |
227 |
atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcactt |
289 |
Q |
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||||||||||||| ||||||||||| ||| ||||| ||||||||||| || |||||| |||| |
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| T |
7800693 |
atcacatttggaggttttctcgtttccagataatacctggaaagaaattgacggtactaactt |
7800755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7908202 - 7908260
Alignment:
| Q |
18 |
tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatc |
76 |
Q |
| |
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||||||||||| |||||| || ||||||||| |||| |||| ||||| ||||||||||| |
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| T |
7908202 |
tcatgtagagggtttatacttttgtaccgtcctccagacatctacatatggaatccatc |
7908260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 37827073 - 37827035
Alignment:
| Q |
134 |
tctatatggttttggttacgatcagtctagagatgatta |
172 |
Q |
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| T |
37827073 |
tctatatggttttggttatgaccagtctagagatgatta |
37827035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
| Q |
133 |
atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc |
191 |
Q |
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||||||||||||||||||| || | ||| ||||||||||| ||||||||||||||||| |
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| T |
12200299 |
atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc |
12200357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
| Q |
133 |
atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc |
191 |
Q |
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||||||||||||||||||| || | ||| ||||||||||| ||||||||||||||||| |
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| T |
12444727 |
atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc |
12444785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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