View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_21 (Length: 333)
Name: NF11658_low_21
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 36938159 - 36938459
Alignment:
| Q |
19 |
ataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttgg |
118 |
Q |
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| T |
36938159 |
ataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttgg |
36938258 |
T |
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| Q |
119 |
cacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatcc |
218 |
Q |
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| T |
36938259 |
cacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatcc |
36938358 |
T |
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| Q |
219 |
ctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacc |
318 |
Q |
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| T |
36938359 |
ctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacc |
36938458 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
36938459 |
c |
36938459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 36948409 - 36948686
Alignment:
| Q |
22 |
aacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcac |
121 |
Q |
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| T |
36948409 |
aacacaagtgaagtcacagatttcactactcgtttctcattttctatcaacacccccaacaaaagttatcatggagatggcatcaccttctatttggcac |
36948508 |
T |
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| Q |
122 |
accccaattttccactacctgttccaag-agatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccct |
220 |
Q |
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| T |
36948509 |
gccccaattttcc--ta--tgtcccaaatagatggaagtggtatcggtctagcgagccgtgttcaattgagtaatccaaattacacaaaagaaaatccat |
36948604 |
T |
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| Q |
221 |
ttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcag |
302 |
Q |
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| T |
36948605 |
ttgtagctgtggaatttgatacatttgttaatgactgggatcctaaatatgatcatgttgggattgatgttaattctatcag |
36948686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 36958552 - 36958820
Alignment:
| Q |
31 |
gaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaatt |
130 |
Q |
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| T |
36958552 |
gaagtcacagatttcaatactcgtttctcatttactatcaacacccccaacaaaacccatcatgcagatggcatgaccttctatttggcacaccccaatt |
36958651 |
T |
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| Q |
131 |
ttccactacctgttcc-aagagatggaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctg |
229 |
Q |
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| T |
36958652 |
ttcc----catgtcccaaatatatggaggcggaatcggtcttgcgagccttgttcaattgagtaatccagattacacaaaagaaaatccatttgtagctg |
36958747 |
T |
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| Q |
230 |
tggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcag |
302 |
Q |
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| T |
36958748 |
tggaatttgatacatttgttaatgaatgggatcctaactatgatcatgttgggattgatgttaattctatcag |
36958820 |
T |
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